miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 129773 0.68 0.930267
Target:  5'- gCGACgaggGCGUCGCUCccgccGGCGUGGgccCGCa -3'
miRNA:   3'- -GCUGa---UGCAGCGGGuc---UUGCACU---GCG- -5'
29375 3' -53.5 NC_006151.1 + 129574 0.68 0.936808
Target:  5'- uGACgGCGUCGCgcugcucCCAGAacuccgcgagcgggcACGUG-CGCa -3'
miRNA:   3'- gCUGaUGCAGCG-------GGUCU---------------UGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 129420 0.66 0.964206
Target:  5'- uCGGCgaggucgACGUCcgGCCCcaaguGGGCGgGGCGCa -3'
miRNA:   3'- -GCUGa------UGCAG--CGGGu----CUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 128811 0.67 0.957106
Target:  5'- gCGGCgcGCGUgGCCCcGuACGcGGCGCu -3'
miRNA:   3'- -GCUGa-UGCAgCGGGuCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 128161 0.68 0.937294
Target:  5'- aGGCUGCG-CGCgauggcguaguugaaCCAGGcgaGCGUGcCGCg -3'
miRNA:   3'- gCUGAUGCaGCG---------------GGUCU---UGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 127841 0.67 0.948677
Target:  5'- uGGCgGCGUCGCggcugcgCCGGAGgG-GGCGCc -3'
miRNA:   3'- gCUGaUGCAGCG-------GGUCUUgCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 125476 0.69 0.881134
Target:  5'- aCGGCcGCGcUCGgCCAGcGCGUcucGGCGCg -3'
miRNA:   3'- -GCUGaUGC-AGCgGGUCuUGCA---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 124761 0.79 0.418321
Target:  5'- gGACUcGCGccuccgCGCCUccgAGAGCGUGACGCg -3'
miRNA:   3'- gCUGA-UGCa-----GCGGG---UCUUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 124707 0.69 0.881134
Target:  5'- uCGGCUACG-CGCCCGGGcgcuuccagcAgGUGGaGCa -3'
miRNA:   3'- -GCUGAUGCaGCGGGUCU----------UgCACUgCG- -5'
29375 3' -53.5 NC_006151.1 + 123938 0.72 0.763168
Target:  5'- uCGGCcucgcCGaCGCCCGGGACG-GGCGCc -3'
miRNA:   3'- -GCUGau---GCaGCGGGUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122945 0.69 0.907592
Target:  5'- cCGACgGCGgCGCCgCGGGggGCGcgGACGCc -3'
miRNA:   3'- -GCUGaUGCaGCGG-GUCU--UGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122789 0.73 0.724211
Target:  5'- gCGGCUGCGcggccUCGCCCGacGAGCGccucgaGGCGCu -3'
miRNA:   3'- -GCUGAUGC-----AGCGGGU--CUUGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122494 0.68 0.935335
Target:  5'- gGGCgagACGgCGCgCCGGcGCGcgGACGCg -3'
miRNA:   3'- gCUGa--UGCaGCG-GGUCuUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122462 0.68 0.913621
Target:  5'- aCGGCggcgGCGggCGCCgAGGcCGggGACGCg -3'
miRNA:   3'- -GCUGa---UGCa-GCGGgUCUuGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 120768 0.68 0.935335
Target:  5'- uGGgUGCGgCGCCCGcuGGCG-GACGCg -3'
miRNA:   3'- gCUgAUGCaGCGGGUc-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 120368 0.67 0.960767
Target:  5'- gCGcCUACcagCGCCCGGAcACGgccgugGACGUg -3'
miRNA:   3'- -GCuGAUGca-GCGGGUCU-UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 118735 0.7 0.858937
Target:  5'- aCGGCUACGUgcuggGCCCGGcggcCGUGccACGCg -3'
miRNA:   3'- -GCUGAUGCAg----CGGGUCuu--GCAC--UGCG- -5'
29375 3' -53.5 NC_006151.1 + 118195 0.67 0.960767
Target:  5'- cCGGCUucgccgggcACGUgGCCguGGugGcgGGCGCc -3'
miRNA:   3'- -GCUGA---------UGCAgCGGguCUugCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 117328 0.73 0.724211
Target:  5'- gGGCgGCGUCggccucggccuuGCCCAGGAagaaguaGUGGCGCa -3'
miRNA:   3'- gCUGaUGCAG------------CGGGUCUUg------CACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 116968 0.69 0.881134
Target:  5'- uGACcuccACGUCGCU--GGACGUGAgGCg -3'
miRNA:   3'- gCUGa---UGCAGCGGguCUUGCACUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.