miRNA display CGI


Results 81 - 100 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 31682 0.7 0.268016
Target:  5'- -aGgGCCgggcCGCCgagCCGGCCGcgccauUGGGCGCc -3'
miRNA:   3'- cgCgCGGa---GCGG---GGCCGGU------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 31746 0.74 0.142837
Target:  5'- cCGCGCCggggacgCGCCUgCGGCgGcGGGCGCg -3'
miRNA:   3'- cGCGCGGa------GCGGG-GCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 33222 0.66 0.468246
Target:  5'- aCGCGgggCGCCCCGGC---GGGCGg -3'
miRNA:   3'- cGCGCggaGCGGGGCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 33277 0.66 0.468246
Target:  5'- gGCG-GCCaUCGCCCgacccuucCCcgGGGCGCg -3'
miRNA:   3'- -CGCgCGG-AGCGGGgcc-----GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 33909 0.68 0.377403
Target:  5'- uCGCGCCUcCGCgUCCGGC---GGGCGg -3'
miRNA:   3'- cGCGCGGA-GCG-GGGCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 33939 0.68 0.385161
Target:  5'- gGCcCGCg-CGCCCCgggGGCUcgGGGCGg -3'
miRNA:   3'- -CGcGCGgaGCGGGG---CCGGuaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 34574 0.66 0.494927
Target:  5'- cGCuCGUCUCuCCgaCCGGCUG-GGGCGCc -3'
miRNA:   3'- -CGcGCGGAGcGG--GGCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 34610 0.66 0.494927
Target:  5'- cGCGCGCCgagCGCga-GGCgCGggugGGGCGa -3'
miRNA:   3'- -CGCGCGGa--GCGgggCCG-GUa---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 35090 0.67 0.41723
Target:  5'- cGCGUGCCgagcaugCGCCUCGcGCCc---GCGCg -3'
miRNA:   3'- -CGCGCGGa------GCGGGGC-CGGuaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 35215 0.66 0.485061
Target:  5'- cGCGCGCCcauUgGCCCgggcgagccgagaUGGCCGccgcGGGgGCc -3'
miRNA:   3'- -CGCGCGG---AgCGGG-------------GCCGGUa---CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 36376 0.68 0.385161
Target:  5'- aGCGgcagagGCCgggGCCCCcggcGGCCccGGGCGCu -3'
miRNA:   3'- -CGCg-----CGGag-CGGGG----CCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 36732 0.67 0.400991
Target:  5'- -gGCGgCUCGauCCUCGGCCGcuuGGCGCc -3'
miRNA:   3'- cgCGCgGAGC--GGGGCCGGUac-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 36861 0.68 0.354766
Target:  5'- uCG-GCCUCGCCggggaCGGCg--GGGCGCc -3'
miRNA:   3'- cGCgCGGAGCGGg----GCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 37176 0.66 0.450874
Target:  5'- -gGCGCC-CGCCgCGGCCccGcGGCc- -3'
miRNA:   3'- cgCGCGGaGCGGgGCCGGuaC-CCGcg -5'
29375 5' -65.6 NC_006151.1 + 37227 0.7 0.262105
Target:  5'- cGCG-GCCUCcccgGCCCCGGCCccGGaGCccGCc -3'
miRNA:   3'- -CGCgCGGAG----CGGGGCCGGuaCC-CG--CG- -5'
29375 5' -65.6 NC_006151.1 + 37548 0.66 0.468246
Target:  5'- cGUGCGCCUCaucuacagcgggGCCgCCggcgaGGCCAUGuccuGGCuGCa -3'
miRNA:   3'- -CGCGCGGAG------------CGG-GG-----CCGGUAC----CCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 37866 0.66 0.485954
Target:  5'- cCGCGCCgCGgacCCCCGcGCCG-GGGagGCg -3'
miRNA:   3'- cGCGCGGaGC---GGGGC-CGGUaCCCg-CG- -5'
29375 5' -65.6 NC_006151.1 + 37970 0.69 0.340216
Target:  5'- gGCGgaCGCCUgCGUCCUGGCCugccGcGGCGUc -3'
miRNA:   3'- -CGC--GCGGA-GCGGGGCCGGua--C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 38038 0.76 0.114709
Target:  5'- cCGCGCCcgcccgCGCCCCGGCCGcccucGGGCccGCc -3'
miRNA:   3'- cGCGCGGa-----GCGGGGCCGGUa----CCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 38252 0.76 0.101405
Target:  5'- cGCG-GCCcucuUCGCCCCGGCCAacgUGGcCGCg -3'
miRNA:   3'- -CGCgCGG----AGCGGGGCCGGU---ACCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.