miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 22790 0.75 0.132822
Target:  5'- cGCGCacgugcuggGCCgUCuCCCCGGCCGUcaggugcaggGGGCGCg -3'
miRNA:   3'- -CGCG---------CGG-AGcGGGGCCGGUA----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 23403 0.79 0.066286
Target:  5'- cCGCGCCagCGCUgguggucgCCGGCCGUGGGgGCg -3'
miRNA:   3'- cGCGCGGa-GCGG--------GGCCGGUACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 23915 0.66 0.494927
Target:  5'- cGCGgGCCcgacggGCCgCCGGUCGUcguggacgGGGUGCc -3'
miRNA:   3'- -CGCgCGGag----CGG-GGCCGGUA--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 24284 0.66 0.494927
Target:  5'- gGCGCGUgUCGggcgggaacuCCUCGGggugcaccCCGaGGGCGCg -3'
miRNA:   3'- -CGCGCGgAGC----------GGGGCC--------GGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 24480 0.68 0.385161
Target:  5'- gGCGUugGUCUCgaugGUCCCGGCgAgcccguaaaaguUGGGCGCc -3'
miRNA:   3'- -CGCG--CGGAG----CGGGGCCGgU------------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 24873 0.7 0.274035
Target:  5'- cGUGUccGCCUCG-CCCGGCCGgcGGGC-Ca -3'
miRNA:   3'- -CGCG--CGGAGCgGGGCCGGUa-CCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 25284 0.7 0.286397
Target:  5'- uGUGUGCUUgGCCgCGGggaCGUGGGCGa -3'
miRNA:   3'- -CGCGCGGAgCGGgGCCg--GUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 26374 0.72 0.203915
Target:  5'- gGCGCGCgUC-CCCCGGCgGgcGGCGUc -3'
miRNA:   3'- -CGCGCGgAGcGGGGCCGgUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 27101 0.69 0.31921
Target:  5'- cGCGCGUgUCGCCCgucacgucggCGGCCGagacGGCGa -3'
miRNA:   3'- -CGCGCGgAGCGGG----------GCCGGUac--CCGCg -5'
29375 5' -65.6 NC_006151.1 + 27210 0.74 0.157263
Target:  5'- -gGCGCCgggGCCCCGcgcGCCGUGGacGCGCa -3'
miRNA:   3'- cgCGCGGag-CGGGGC---CGGUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 27406 0.71 0.230946
Target:  5'- aCGgG-CUCGUaccagucggcccagaCCCGGuCCAUGGGCGCg -3'
miRNA:   3'- cGCgCgGAGCG---------------GGGCC-GGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 28112 0.74 0.16107
Target:  5'- gGCGCGgCUCcuCgUCGGCUcgGGGCGCg -3'
miRNA:   3'- -CGCGCgGAGc-GgGGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 28143 0.67 0.416408
Target:  5'- cCGCGCCUC-UCCCGGucgauccCCGUcGGCGUc -3'
miRNA:   3'- cGCGCGGAGcGGGGCC-------GGUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 28288 0.66 0.468246
Target:  5'- cGCGgGCCcggcUC-CCCCauuGGCCGgcgcguccccgGGGCGCc -3'
miRNA:   3'- -CGCgCGG----AGcGGGG---CCGGUa----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 28489 0.68 0.362205
Target:  5'- uGCGUGCCaaGUCCCGGgaaggGGGCGg -3'
miRNA:   3'- -CGCGCGGagCGGGGCCggua-CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 28768 0.67 0.40906
Target:  5'- aGCGUGCCagGaCCCGaGUCGgcgGGGCGg -3'
miRNA:   3'- -CGCGCGGagCgGGGC-CGGUa--CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 30568 0.72 0.199221
Target:  5'- aCGCGCCgu-CCCgCGGCCccgucGGGCGCa -3'
miRNA:   3'- cGCGCGGagcGGG-GCCGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 30666 0.7 0.29274
Target:  5'- cGCGCugguuccgggaaGCCUC-CCCCGGCgGgcggggGGGUGUc -3'
miRNA:   3'- -CGCG------------CGGAGcGGGGCCGgUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 31328 0.7 0.274035
Target:  5'- cGCGCGCC-CaCCCuCGgcGCCGUGGGCcCg -3'
miRNA:   3'- -CGCGCGGaGcGGG-GC--CGGUACCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 31592 0.71 0.239516
Target:  5'- gGCGCGCUccgCGCUCCcccGCCGccUGGGCGg -3'
miRNA:   3'- -CGCGCGGa--GCGGGGc--CGGU--ACCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.