miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 102407 0.74 0.157263
Target:  5'- gGCGCGCgUCGCgcggCCCgcgaacgaGGCCAUgcaccGGGCGCu -3'
miRNA:   3'- -CGCGCGgAGCG----GGG--------CCGGUA-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 27210 0.74 0.157263
Target:  5'- -gGCGCCgggGCCCCGcgcGCCGUGGacGCGCa -3'
miRNA:   3'- cgCGCGGag-CGGGGC---CGGUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 68277 0.74 0.157263
Target:  5'- cGCgGCGCCgggCGCCacggCGGCCA-GGcGCGCg -3'
miRNA:   3'- -CG-CGCGGa--GCGGg---GCCGGUaCC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 71188 0.74 0.160686
Target:  5'- gGCGCcgucaugGCCUCGCaggagcucgugUCCGuGaCCGUGGGCGCg -3'
miRNA:   3'- -CGCG-------CGGAGCG-----------GGGC-C-GGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 28112 0.74 0.16107
Target:  5'- gGCGCGgCUCcuCgUCGGCUcgGGGCGCg -3'
miRNA:   3'- -CGCGCgGAGc-GgGGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 50007 0.73 0.165354
Target:  5'- uGCGCGCCgCGCgCgCGGCCcgcgcggcgcccccGGGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGgG-GCCGGua------------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 101843 0.73 0.168935
Target:  5'- cGC-CGCCccCGCCCCGGCacccgGcGGCGCa -3'
miRNA:   3'- -CGcGCGGa-GCGGGGCCGgua--C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 120341 0.73 0.168935
Target:  5'- cGCGCGCC-CGCguggCCgGGCuCGcGGGCGCc -3'
miRNA:   3'- -CGCGCGGaGCG----GGgCCG-GUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 105715 0.73 0.168935
Target:  5'- cGCGCGCCUCGa-CgGcGCCGUGcGCGCg -3'
miRNA:   3'- -CGCGCGGAGCggGgC-CGGUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 84176 0.73 0.172995
Target:  5'- gGCGCGCCUccucgcCGCCgCCGuGCCcccGGGCGg -3'
miRNA:   3'- -CGCGCGGA------GCGG-GGC-CGGua-CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 86082 0.73 0.172995
Target:  5'- cGCGCGCg-CGCCgCCGccGCCAUGGG-GCc -3'
miRNA:   3'- -CGCGCGgaGCGG-GGC--CGGUACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 78950 0.73 0.172995
Target:  5'- cGCGCGCCcgccCGCCUCGGUCuc-GGUGCc -3'
miRNA:   3'- -CGCGCGGa---GCGGGGCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 96577 0.73 0.177141
Target:  5'- aGCGcCGCCUCGCggcgcgaggCgCCGGgCGcGGGCGCg -3'
miRNA:   3'- -CGC-GCGGAGCG---------G-GGCCgGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102815 0.73 0.178824
Target:  5'- gGCGCGCaguacagCGCCaaGGCCAUGcugauggaccgcaacGGCGCg -3'
miRNA:   3'- -CGCGCGga-----GCGGggCCGGUAC---------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 50437 0.73 0.180948
Target:  5'- uGCGCGCCggCGgCCUGGgcaccgcCCGcGGGCGCu -3'
miRNA:   3'- -CGCGCGGa-GCgGGGCC-------GGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 114131 0.73 0.181376
Target:  5'- cGUGCGCCgccgccgaGCCgCGGCUc-GGGCGCa -3'
miRNA:   3'- -CGCGCGGag------CGGgGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 7077 0.73 0.182664
Target:  5'- cGCGCGCCUCugauuugcaugcccgGCCCgcucugCGGCCAUcuuggccGcGGCGCg -3'
miRNA:   3'- -CGCGCGGAG---------------CGGG------GCCGGUA-------C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 89916 0.73 0.185263
Target:  5'- cGCGUucuccacgcuguaGCCgCGCCCCaGGuCCGcGGGCGCg -3'
miRNA:   3'- -CGCG-------------CGGaGCGGGG-CC-GGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 133223 0.73 0.1857
Target:  5'- gGCGUGCgUCGCgCCGcGCCA-GGGCa- -3'
miRNA:   3'- -CGCGCGgAGCGgGGC-CGGUaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 102238 0.73 0.1857
Target:  5'- cGUGCGCCgUCGCCgCGcucuucgaGCCcauccUGGGCGCg -3'
miRNA:   3'- -CGCGCGG-AGCGGgGC--------CGGu----ACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.