miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 28288 0.66 0.468246
Target:  5'- cGCGgGCCcggcUC-CCCCauuGGCCGgcgcguccccgGGGCGCc -3'
miRNA:   3'- -CGCgCGG----AGcGGGG---CCGGUa----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 15935 0.66 0.468246
Target:  5'- gGCGgGCCUCGCCCCGcGCUGUu----- -3'
miRNA:   3'- -CGCgCGGAGCGGGGC-CGGUAcccgcg -5'
29375 5' -65.6 NC_006151.1 + 138916 0.66 0.468246
Target:  5'- aGCGUG-CUCGCCgccaCGGUCAUcGGCuGCa -3'
miRNA:   3'- -CGCGCgGAGCGGg---GCCGGUAcCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 82339 0.66 0.468246
Target:  5'- cGCGgGCCacacCGCCgCCGugguguacgugcGCCGgacgccGGGCGCg -3'
miRNA:   3'- -CGCgCGGa---GCGG-GGC------------CGGUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 111315 0.66 0.468246
Target:  5'- gGCG-GCCgcgUGCCCgGGCac-GGGCGa -3'
miRNA:   3'- -CGCgCGGa--GCGGGgCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 48892 0.66 0.468246
Target:  5'- cGCGCGCCU-GCgCUGGCCGaguaccGcGGcCGCu -3'
miRNA:   3'- -CGCGCGGAgCGgGGCCGGUa-----C-CC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 50363 0.66 0.468246
Target:  5'- cCGCGUCUC-CgCCGGCgG-GGGCGa -3'
miRNA:   3'- cGCGCGGAGcGgGGCCGgUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 52940 0.66 0.468246
Target:  5'- cUGCGCgUCGCCC--GCCAccuUGaGGUGCg -3'
miRNA:   3'- cGCGCGgAGCGGGgcCGGU---AC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58428 0.66 0.468246
Target:  5'- uGCGgcaGCCaCGCCUCGGUggCGUGcGCGCg -3'
miRNA:   3'- -CGCg--CGGaGCGGGGCCG--GUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 87525 0.66 0.468246
Target:  5'- cCGCGCC-CGCCUCGGCCccccaGcCGCc -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGGuacc-C-GCG- -5'
29375 5' -65.6 NC_006151.1 + 96206 0.66 0.468246
Target:  5'- gGCGcCGCgUCGCCguggcggCGGCCGcggcGaGGCGCa -3'
miRNA:   3'- -CGC-GCGgAGCGGg------GCCGGUa---C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 104188 0.66 0.468246
Target:  5'- cGCGCGCUcggCGCCaacgCCGaGaCCGUGaccacGGCGCu -3'
miRNA:   3'- -CGCGCGGa--GCGG----GGC-C-GGUAC-----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 613 0.66 0.465618
Target:  5'- cGCGCcggccccuuccGCUUC-CCCCGGacgugacgccggcuUCcgGGGCGCg -3'
miRNA:   3'- -CGCG-----------CGGAGcGGGGCC--------------GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10621 0.66 0.459516
Target:  5'- cGCGCGCCcgcgUGCgCUCGuGCC---GGCGCg -3'
miRNA:   3'- -CGCGCGGa---GCG-GGGC-CGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 5732 0.66 0.459516
Target:  5'- gGCGCcgggguccgagGCCgCGCCgCCGGCCc-GGGCu- -3'
miRNA:   3'- -CGCG-----------CGGaGCGG-GGCCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 109662 0.66 0.459516
Target:  5'- uGC-CGCCaccgcCGCCCCcucagccGCUAUGGGCGa -3'
miRNA:   3'- -CGcGCGGa----GCGGGGc------CGGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 104530 0.66 0.459516
Target:  5'- cGCG-GCUUCcccgaguacgagGCCgagCUGGCCGcccUGGGCGCg -3'
miRNA:   3'- -CGCgCGGAG------------CGG---GGCCGGU---ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 78029 0.66 0.459516
Target:  5'- gGUGCGCUaCaUCCCGGCgAcGcGGCGCa -3'
miRNA:   3'- -CGCGCGGaGcGGGGCCGgUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 79091 0.66 0.458648
Target:  5'- cGCGCGCgCgagcgagCGCCCCuccgucguggcugGGCCAcGGcCGCc -3'
miRNA:   3'- -CGCGCG-Ga------GCGGGG-------------CCGGUaCCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 89259 0.66 0.454321
Target:  5'- -aGCGCCgucguggucgacggCGCCgCGGCgAUGGcCGCc -3'
miRNA:   3'- cgCGCGGa-------------GCGGgGCCGgUACCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.