miRNA display CGI


Results 81 - 100 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 68739 0.66 0.454321
Target:  5'- aGCGgGCCgcucucgaaggucaCGUagCCGGCgGUGGcGCGCg -3'
miRNA:   3'- -CGCgCGGa-------------GCGg-GGCCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 89259 0.66 0.454321
Target:  5'- -aGCGCCgucguggucgacggCGCCgCGGCgAUGGcCGCc -3'
miRNA:   3'- cgCGCGGa-------------GCGGgGCCGgUACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 69288 0.66 0.454321
Target:  5'- gGCGCGCCaccagggacacggGCCgCCGGCgccacacgugCGcGGGCGCg -3'
miRNA:   3'- -CGCGCGGag-----------CGG-GGCCG----------GUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 37176 0.66 0.450874
Target:  5'- -gGCGCC-CGCCgCGGCCccGcGGCc- -3'
miRNA:   3'- cgCGCGGaGCGGgGCCGGuaC-CCGcg -5'
29375 5' -65.6 NC_006151.1 + 114675 0.66 0.450874
Target:  5'- -aGCGCCgcgaagGCCUCGuGCUcgaaGGGCGCg -3'
miRNA:   3'- cgCGCGGag----CGGGGC-CGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 112716 0.66 0.450874
Target:  5'- uGUGCGCCaagGCCCUGGCCugccccccGuGCGCc -3'
miRNA:   3'- -CGCGCGGag-CGGGGCCGGuac-----C-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106644 0.66 0.450874
Target:  5'- -aGCGCCUggaCGCCgCGGCgCAcGuGCGCg -3'
miRNA:   3'- cgCGCGGA---GCGGgGCCG-GUaCcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 88728 0.66 0.450874
Target:  5'- -gGCGUC-CGCCgCGGCCAc--GCGCa -3'
miRNA:   3'- cgCGCGGaGCGGgGCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 66254 0.66 0.450874
Target:  5'- uGCGCGCCUugaagaCGCUCUcgcgcugaaaGGCCuccucGaGGCGCa -3'
miRNA:   3'- -CGCGCGGA------GCGGGG----------CCGGua---C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 56595 0.66 0.450874
Target:  5'- gGUGCGgaCgCGCCCCGGC----GGCGCg -3'
miRNA:   3'- -CGCGCg-GaGCGGGGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 85864 0.66 0.450874
Target:  5'- aGCGCGUgaCgGCCCCcgucaacgaGGUCAUcGcGGCGCa -3'
miRNA:   3'- -CGCGCGgaG-CGGGG---------CCGGUA-C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 90629 0.66 0.450874
Target:  5'- gGCG-GCC-CGCgggcgCuuGGCgAUGGGCGUg -3'
miRNA:   3'- -CGCgCGGaGCG-----GggCCGgUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 90972 0.66 0.450874
Target:  5'- cCGCGUCgaCGCCCUGGCgCcgcuggcUGGcGCGCu -3'
miRNA:   3'- cGCGCGGa-GCGGGGCCG-Gu------ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 94727 0.66 0.450874
Target:  5'- cCGCGCCacggCGUCCCGGCgc---GCGCa -3'
miRNA:   3'- cGCGCGGa---GCGGGGCCGguaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102574 0.66 0.450874
Target:  5'- cGCGCGCCcgCGCgcgcgaguCCCGcgaGUCGcagcGGGCGCu -3'
miRNA:   3'- -CGCGCGGa-GCG--------GGGC---CGGUa---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 117792 0.66 0.450874
Target:  5'- gGgGCGCCaCG-CCCGGCg--GGGCGg -3'
miRNA:   3'- -CgCGCGGaGCgGGGCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 133487 0.66 0.450874
Target:  5'- cGCGgGCgUCaCCuuGGCgGcgcgggGGGCGCg -3'
miRNA:   3'- -CGCgCGgAGcGGggCCGgUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 139917 0.66 0.450874
Target:  5'- cCGCGCCgcgGgCUCGucGCCGUGGGcCGCc -3'
miRNA:   3'- cGCGCGGag-CgGGGC--CGGUACCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 58684 0.66 0.450874
Target:  5'- cCGCGCCgugCGCgCCGcGCCAca-GCGCc -3'
miRNA:   3'- cGCGCGGa--GCGgGGC-CGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8834 0.66 0.450874
Target:  5'- cGCGCGCCUCuCCCCGuG-CGUGucuCGCu -3'
miRNA:   3'- -CGCGCGGAGcGGGGC-CgGUACcc-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.