miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 112434 0.75 0.132822
Target:  5'- cCGCGCCgccgcCGCCgCGcGCCAUGGGCu- -3'
miRNA:   3'- cGCGCGGa----GCGGgGC-CGGUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 52261 0.75 0.132822
Target:  5'- uGCGCGuacaCCUCGCUCgUGGUCucgGGGCGCg -3'
miRNA:   3'- -CGCGC----GGAGCGGG-GCCGGua-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 22790 0.75 0.132822
Target:  5'- cGCGCacgugcuggGCCgUCuCCCCGGCCGUcaggugcaggGGGCGCg -3'
miRNA:   3'- -CGCG---------CGG-AGcGGGGCCGGUA----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 112190 0.75 0.132822
Target:  5'- uCGCGCCgCGCCCgcaGcGCCuccccGUGGGCGCa -3'
miRNA:   3'- cGCGCGGaGCGGGg--C-CGG-----UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 123886 0.75 0.136086
Target:  5'- gGCGCucGCCgcgGCCCC-GCCGUGcGGCGCg -3'
miRNA:   3'- -CGCG--CGGag-CGGGGcCGGUAC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 120737 0.75 0.136086
Target:  5'- -aGCGCC-CGCgggaCCCGGCCGcgucauggccUGGGUGCg -3'
miRNA:   3'- cgCGCGGaGCG----GGGCCGGU----------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10500 0.75 0.137412
Target:  5'- cGCGCGCCcgccgccgcaggcgCGuCCCCGGCgc-GGGCGCc -3'
miRNA:   3'- -CGCGCGGa-------------GC-GGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136886 0.75 0.139424
Target:  5'- -aGCGCCUCGCgCCCcacGGC--UGGGUGCg -3'
miRNA:   3'- cgCGCGGAGCG-GGG---CCGguACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 82985 0.74 0.142837
Target:  5'- cGCGCGUCUgCGCCgccaCGGCCGc-GGCGCa -3'
miRNA:   3'- -CGCGCGGA-GCGGg---GCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 119527 0.74 0.142837
Target:  5'- cCGCGCCUCGCgCCCcGCC-UGcGCGCa -3'
miRNA:   3'- cGCGCGGAGCG-GGGcCGGuACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 31746 0.74 0.142837
Target:  5'- cCGCGCCggggacgCGCCUgCGGCgGcGGGCGCg -3'
miRNA:   3'- cGCGCGGa------GCGGG-GCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 70782 0.74 0.142837
Target:  5'- cGCGCGCCUCcgGCaCCGGCguggccguCGUGGGCaGCu -3'
miRNA:   3'- -CGCGCGGAG--CGgGGCCG--------GUACCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 91094 0.74 0.142837
Target:  5'- aGCGCGaaggUCGUCCCGGCCGc-GGCGCc -3'
miRNA:   3'- -CGCGCgg--AGCGGGGCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 114915 0.74 0.142837
Target:  5'- gGCGCacggccccgGCgUCGCgCUCGGCCuccgggGUGGGCGCg -3'
miRNA:   3'- -CGCG---------CGgAGCG-GGGCCGG------UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 13948 0.74 0.146326
Target:  5'- cGgGCGCCccggggaCGCgCCGGCCAUGGGgGa -3'
miRNA:   3'- -CgCGCGGa------GCGgGGCCGGUACCCgCg -5'
29375 5' -65.6 NC_006151.1 + 64939 0.74 0.146326
Target:  5'- cGCGCGUCa-GCgCCUGGCCGcgcugcGGGCGCa -3'
miRNA:   3'- -CGCGCGGagCG-GGGCCGGUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 51283 0.74 0.149892
Target:  5'- aGCGCGcCCUCggggGCCgCCGGCCA-GGuccGCGCg -3'
miRNA:   3'- -CGCGC-GGAG----CGG-GGCCGGUaCC---CGCG- -5'
29375 5' -65.6 NC_006151.1 + 104410 0.74 0.149892
Target:  5'- gGCGUGCUggcccgcgcCGCCgCCGGCaugGGGCGCu -3'
miRNA:   3'- -CGCGCGGa--------GCGG-GGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 81355 0.74 0.153538
Target:  5'- cCGCGCCcgggGCCCCGGC---GGGCGCc -3'
miRNA:   3'- cGCGCGGag--CGGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 68277 0.74 0.157263
Target:  5'- cGCgGCGCCgggCGCCacggCGGCCA-GGcGCGCg -3'
miRNA:   3'- -CG-CGCGGa--GCGGg---GCCGGUaCC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.