miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 11020 0.67 0.40906
Target:  5'- cGCcCGCucgCUCGCCgggCCGGCCGgccGGGgGCc -3'
miRNA:   3'- -CGcGCG---GAGCGG---GGCCGGUa--CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 13948 0.74 0.146326
Target:  5'- cGgGCGCCccggggaCGCgCCGGCCAUGGGgGa -3'
miRNA:   3'- -CgCGCGGa------GCGgGGCCGGUACCCgCg -5'
29375 5' -65.6 NC_006151.1 + 14005 0.69 0.326102
Target:  5'- aCGUGUgagGCCCCGGCCAaUGGGCcCg -3'
miRNA:   3'- cGCGCGgagCGGGGCCGGU-ACCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 14398 0.67 0.400991
Target:  5'- cGCGCGuCCgUCGCCuaGGUgAgucgGGGgGCu -3'
miRNA:   3'- -CGCGC-GG-AGCGGggCCGgUa---CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 15174 0.71 0.254008
Target:  5'- cGCGCGCCcugcgccgCGCCCUcuuugacuuuuacGCCAUGGGCu- -3'
miRNA:   3'- -CGCGCGGa-------GCGGGGc------------CGGUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 15336 0.68 0.385161
Target:  5'- cGCGCGuCCUCuCCCCgccGGUCAUcgaGGGCccGCu -3'
miRNA:   3'- -CGCGC-GGAGcGGGG---CCGGUA---CCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 15935 0.66 0.468246
Target:  5'- gGCGgGCCUCGCCCCGcGCUGUu----- -3'
miRNA:   3'- -CGCgCGGAGCGGGGC-CGGUAcccgcg -5'
29375 5' -65.6 NC_006151.1 + 16905 0.78 0.077088
Target:  5'- cCGCGCC-CGCCCCGGCgcc-GGCGCa -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 17556 0.75 0.126509
Target:  5'- gGUGCGCCUCGCCCacgaaGGCg--GGGaUGCg -3'
miRNA:   3'- -CGCGCGGAGCGGGg----CCGguaCCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 17790 0.72 0.218576
Target:  5'- cGCcCGCUUCGCCCCcccGGaCCcccccuccUGGGCGCg -3'
miRNA:   3'- -CGcGCGGAGCGGGG---CC-GGu-------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 17960 0.66 0.485954
Target:  5'- -gGCGCC-CGCCugCCGGCguccCAcGcGGCGCa -3'
miRNA:   3'- cgCGCGGaGCGG--GGCCG----GUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 18663 0.69 0.31921
Target:  5'- cCGgGCgUCG-UCCGGCCGUacggguuccacGGGCGCg -3'
miRNA:   3'- cGCgCGgAGCgGGGCCGGUA-----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 18736 0.67 0.442322
Target:  5'- uCGCGUCgUCGCCgCCgccggGGCCccacgGGGUGCc -3'
miRNA:   3'- cGCGCGG-AGCGG-GG-----CCGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 19020 0.67 0.443173
Target:  5'- cGCGCGCCggCGaggugaagcugcacgCCgGGuCCAccGGGCGCa -3'
miRNA:   3'- -CGCGCGGa-GCg--------------GGgCC-GGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 19278 0.68 0.347436
Target:  5'- gGCGCGCgggGCCCaccggGGCCAgcGGCGCg -3'
miRNA:   3'- -CGCGCGgagCGGGg----CCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 20467 0.68 0.36975
Target:  5'- -gGCGCCggUC-CCCCGGgg--GGGCGCg -3'
miRNA:   3'- cgCGCGG--AGcGGGGCCgguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 20754 0.66 0.485954
Target:  5'- gGCGCGCCUCcaCCgCGGCgGacgcgcgccGGGCGa -3'
miRNA:   3'- -CGCGCGGAGc-GGgGCCGgUa--------CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 21276 0.68 0.357729
Target:  5'- aGCGCGCCcaUCGCggugCCCGuGCCGacgaucaccgagcgGuGGCGCg -3'
miRNA:   3'- -CGCGCGG--AGCG----GGGC-CGGUa-------------C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 21474 0.7 0.26152
Target:  5'- cGCGuCGCCg-GCUCgggcaggCGGCCGggGGGCGCg -3'
miRNA:   3'- -CGC-GCGGagCGGG-------GCCGGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 22046 0.73 0.191906
Target:  5'- uGCGCGCaCcCGUCCgcgaugcgguaccaGGCCAcgUGGGCGCg -3'
miRNA:   3'- -CGCGCG-GaGCGGGg-------------CCGGU--ACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.