miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 131864 0.69 0.31921
Target:  5'- cGCGCGCCggcggcgucgggUCGCagggcagcaCGGCCGaGGGCGa -3'
miRNA:   3'- -CGCGCGG------------AGCGgg-------GCCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 131803 0.67 0.425498
Target:  5'- aGCGCGCCaUCcuCCUCGGCCuc-GGCuaGCg -3'
miRNA:   3'- -CGCGCGG-AGc-GGGGCCGGuacCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 131766 0.68 0.347436
Target:  5'- cGCG-GUCgCGaCCgCGGCCGcGGGCGCc -3'
miRNA:   3'- -CGCgCGGaGC-GGgGCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130500 0.67 0.400991
Target:  5'- gGCGCcacacGCCgcgCGUCUCGGgCGcGGGCGUc -3'
miRNA:   3'- -CGCG-----CGGa--GCGGGGCCgGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130403 0.78 0.079045
Target:  5'- -aGCGCCUCGCCCgCGaGCgc-GGGCGCg -3'
miRNA:   3'- cgCGCGGAGCGGG-GC-CGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130344 0.66 0.494927
Target:  5'- cGCGCGCCgcggCGUCgugguugaCGGCCGcGcGCGCc -3'
miRNA:   3'- -CGCGCGGa---GCGGg-------GCCGGUaCcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130316 0.67 0.393025
Target:  5'- aGCGCGCg-CGCCgCGcGCUcgGGGaGCu -3'
miRNA:   3'- -CGCGCGgaGCGGgGC-CGGuaCCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 130270 0.77 0.089565
Target:  5'- gGCGCGCg--GCCCCgaGGCCGcGGGCGCg -3'
miRNA:   3'- -CGCGCGgagCGGGG--CCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130217 0.67 0.442322
Target:  5'- aCGCGCa--GCUCCGGCCAguaggccaGGGagcCGCa -3'
miRNA:   3'- cGCGCGgagCGGGGCCGGUa-------CCC---GCG- -5'
29375 5' -65.6 NC_006151.1 + 130101 0.8 0.056519
Target:  5'- cGCGCuCCUCgGCCgugaagcccggguuCUGGCCGUGGGCGCg -3'
miRNA:   3'- -CGCGcGGAG-CGG--------------GGCCGGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 129848 0.68 0.362205
Target:  5'- aGCGacacgGCCUgGCCCaGGCCcGUGGcgucGCGCg -3'
miRNA:   3'- -CGCg----CGGAgCGGGgCCGG-UACC----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 129663 0.69 0.333104
Target:  5'- aGCGcCGCCUCGUacacgcgcaccgUCCGGCCgccGUGgaccgcGGCGCc -3'
miRNA:   3'- -CGC-GCGGAGCG------------GGGCCGG---UAC------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 129445 0.68 0.385161
Target:  5'- aGUGgGCggggCGCa-CGGCCGUGGGCGg -3'
miRNA:   3'- -CGCgCGga--GCGggGCCGGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 129103 0.68 0.354766
Target:  5'- uGCuGCGCaCgagCGCCagGGCCGaggcgcgcUGGGCGCc -3'
miRNA:   3'- -CG-CGCG-Ga--GCGGggCCGGU--------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 128813 0.71 0.250601
Target:  5'- gGCGCGCgUgGCCCCGuaCGc-GGCGCu -3'
miRNA:   3'- -CGCGCGgAgCGGGGCcgGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 128606 0.66 0.484169
Target:  5'- cGCGCGCCacccgcggcgugCGCCCCaGGUgGcGGaccacGCGCg -3'
miRNA:   3'- -CGCGCGGa-----------GCGGGG-CCGgUaCC-----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 128194 0.76 0.101405
Target:  5'- aGCGUGCCgcgcuccauggCGCCCCaGGCgugcgacgagcuCGUGGGCGCc -3'
miRNA:   3'- -CGCGCGGa----------GCGGGG-CCG------------GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 126387 0.69 0.312428
Target:  5'- aGCGgGCCcgCGCUgCUGGCCAgccgcgucgGGGCGa -3'
miRNA:   3'- -CGCgCGGa-GCGG-GGCCGGUa--------CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 126004 0.7 0.292101
Target:  5'- uGCGCGgcaucgccaacuuCUUCcaggGCCUCGGCgaCGUGGGCGCc -3'
miRNA:   3'- -CGCGC-------------GGAG----CGGGGCCG--GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 125449 0.7 0.286397
Target:  5'- uCGCGCCUgaaccccagCGCCgUGGCCAcGGccGCGCu -3'
miRNA:   3'- cGCGCGGA---------GCGGgGCCGGUaCC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.