miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 136961 0.69 0.315128
Target:  5'- uGCGcCGCCUgcuggagcuggccgcCGCgCCGGgCGgcGGGCGCg -3'
miRNA:   3'- -CGC-GCGGA---------------GCGgGGCCgGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136886 0.75 0.139424
Target:  5'- -aGCGCCUCGCgCCCcacGGC--UGGGUGCg -3'
miRNA:   3'- cgCGCGGAGCG-GGG---CCGguACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136755 1.11 0.000292
Target:  5'- cGCGCGCCUCGCCCCGGCCAUGGGCGCc -3'
miRNA:   3'- -CGCGCGGAGCGGGGCCGGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136673 0.66 0.494927
Target:  5'- cGCGCgGCCgcCGCCUUcuuccGCCAcgugcGGGCGCa -3'
miRNA:   3'- -CGCG-CGGa-GCGGGGc----CGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136461 0.7 0.286397
Target:  5'- aGCGCGUgcgCGCCgaCCGcGCCGagaUGGGCGUc -3'
miRNA:   3'- -CGCGCGga-GCGG--GGC-CGGU---ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136213 0.66 0.477059
Target:  5'- gGCGCGCUUCgGCCCCGaggagaagacGCU---GGUGCu -3'
miRNA:   3'- -CGCGCGGAG-CGGGGC----------CGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136077 0.69 0.297246
Target:  5'- aCGCGCCggagCGCCCgcugcgcuccaucgCGGUC--GGGCGCc -3'
miRNA:   3'- cGCGCGGa---GCGGG--------------GCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 135904 0.68 0.354766
Target:  5'- cGC-CGCCgCGaCCCCGGCgguCGUGcGCGCg -3'
miRNA:   3'- -CGcGCGGaGC-GGGGCCG---GUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 135832 0.67 0.406629
Target:  5'- aGCGCGCC--GCCCCGGCgucacguucugccuCAccGGGCa- -3'
miRNA:   3'- -CGCGCGGagCGGGGCCG--------------GUa-CCCGcg -5'
29375 5' -65.6 NC_006151.1 + 135469 0.72 0.213592
Target:  5'- uGCGCGCCagcgugucCGCgCgGGCCAgGcGGCGCg -3'
miRNA:   3'- -CGCGCGGa-------GCGgGgCCGGUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 134994 0.67 0.400991
Target:  5'- gGCGgGCg-CGUCuuGGCgG-GGGCGCg -3'
miRNA:   3'- -CGCgCGgaGCGGggCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 134698 0.67 0.440623
Target:  5'- cGCGCGCCccgaugcagcacCGCCCCgcguGGCCuuc-GCGCg -3'
miRNA:   3'- -CGCGCGGa-----------GCGGGG----CCGGuaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 134320 0.67 0.393025
Target:  5'- cGCuGCGCCUCGCgCCGGgCAUcgccacGGaCGUg -3'
miRNA:   3'- -CG-CGCGGAGCGgGGCCgGUA------CCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 134273 0.66 0.485954
Target:  5'- -gGCGauuguaGCCCCgGGCCGcccacGGGCGCa -3'
miRNA:   3'- cgCGCggag--CGGGG-CCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 133487 0.66 0.450874
Target:  5'- cGCGgGCgUCaCCuuGGCgGcgcgggGGGCGCg -3'
miRNA:   3'- -CGCgCGgAGcGGggCCGgUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 133451 0.67 0.433863
Target:  5'- gGCGCuCUUgGCCCCGGUCGaGGccCGCg -3'
miRNA:   3'- -CGCGcGGAgCGGGGCCGGUaCCc-GCG- -5'
29375 5' -65.6 NC_006151.1 + 133223 0.73 0.1857
Target:  5'- gGCGUGCgUCGCgCCGcGCCA-GGGCa- -3'
miRNA:   3'- -CGCGCGgAGCGgGGC-CGGUaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 132816 0.67 0.41723
Target:  5'- aGCGCGuCCgggcuggcCGCCCgcgggaCGGCCAccacGGGCGg -3'
miRNA:   3'- -CGCGC-GGa-------GCGGG------GCCGGUa---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 132765 0.68 0.361456
Target:  5'- aGCaGCGCCggGCCCUcgucgaaGGCCAggucgcugaUGaGGCGCu -3'
miRNA:   3'- -CG-CGCGGagCGGGG-------CCGGU---------AC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 132116 0.66 0.450874
Target:  5'- cGCGCacgagcggcagGCCcagcUCGCgCCGGCgGUGGuugacgGCGCg -3'
miRNA:   3'- -CGCG-----------CGG----AGCGgGGCCGgUACC------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.