miRNA display CGI


Results 21 - 40 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 6480 0.7 0.280162
Target:  5'- gGCGgGCCgagaGCCUCGGUgGgucGGGCGUc -3'
miRNA:   3'- -CGCgCGGag--CGGGGCCGgUa--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 6917 0.67 0.433863
Target:  5'- uCGCGUCUacuuUGCauguCCGGCCccgaGGGCGCc -3'
miRNA:   3'- cGCGCGGA----GCGg---GGCCGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 7028 0.8 0.055383
Target:  5'- gGCGgccaucuCGgCUCGCCCgGGCCaAUGGGCGCg -3'
miRNA:   3'- -CGC-------GCgGAGCGGGgCCGG-UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 7077 0.73 0.182664
Target:  5'- cGCGCGCCUCugauuugcaugcccgGCCCgcucugCGGCCAUcuuggccGcGGCGCg -3'
miRNA:   3'- -CGCGCGGAG---------------CGGG------GCCGGUA-------C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 7272 0.67 0.400991
Target:  5'- aCGUGgC-CGCCCuCGGCCaAUGGG-GCc -3'
miRNA:   3'- cGCGCgGaGCGGG-GCCGG-UACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 7649 0.76 0.103944
Target:  5'- cCGCGCCUCGCgCUCGGCgCGcgcuccgaGGGCGCc -3'
miRNA:   3'- cGCGCGGAGCG-GGGCCG-GUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8258 0.66 0.494927
Target:  5'- gGCGCGCCgggaCGCCCCu-CCggGGGaaagagugucccCGCg -3'
miRNA:   3'- -CGCGCGGa---GCGGGGccGGuaCCC------------GCG- -5'
29375 5' -65.6 NC_006151.1 + 8306 0.8 0.056951
Target:  5'- cCGCGUCcCGCCCCGaGCCcccgGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGGGC-CGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8334 0.67 0.442322
Target:  5'- cGCGgGCCUCGaucgcgCCC-GCCGgacgcgGaGGCGCg -3'
miRNA:   3'- -CGCgCGGAGCg-----GGGcCGGUa-----C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8721 0.67 0.425498
Target:  5'- --cCGCCgUCGCCUCGGuCCGaggagggGGGUGCc -3'
miRNA:   3'- cgcGCGG-AGCGGGGCC-GGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8834 0.66 0.450874
Target:  5'- cGCGCGCCUCuCCCCGuG-CGUGucuCGCu -3'
miRNA:   3'- -CGCGCGGAGcGGGGC-CgGUACcc-GCG- -5'
29375 5' -65.6 NC_006151.1 + 8966 0.7 0.274035
Target:  5'- cGCGCGCg-CGCCCCGGgaAgggucGGGCGa -3'
miRNA:   3'- -CGCGCGgaGCGGGGCCggUa----CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 9037 0.71 0.228844
Target:  5'- cGCcCGCCggggCGCCCCGcgugcuCCggGGGCGCc -3'
miRNA:   3'- -CGcGCGGa---GCGGGGCc-----GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 9469 0.67 0.404207
Target:  5'- cCGCGUC-CGCUUCGGCCccccgcggccgcggcGUGGGagaGCg -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGG---------------UACCCg--CG- -5'
29375 5' -65.6 NC_006151.1 + 9664 0.68 0.354766
Target:  5'- cCGCGCUUccccuuccCGCuucccccuccgCCCGGCCGcGGGUGCc -3'
miRNA:   3'- cGCGCGGA--------GCG-----------GGGCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 9921 0.7 0.268016
Target:  5'- -gGCGCCUCggGCCUCGGagAUGGGgaCGCg -3'
miRNA:   3'- cgCGCGGAG--CGGGGCCggUACCC--GCG- -5'
29375 5' -65.6 NC_006151.1 + 10500 0.75 0.137412
Target:  5'- cGCGCGCCcgccgccgcaggcgCGuCCCCGGCgc-GGGCGCc -3'
miRNA:   3'- -CGCGCGGa-------------GC-GGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10621 0.66 0.459516
Target:  5'- cGCGCGCCcgcgUGCgCUCGuGCC---GGCGCg -3'
miRNA:   3'- -CGCGCGGa---GCG-GGGC-CGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10863 0.66 0.485954
Target:  5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3'
miRNA:   3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10909 0.67 0.442322
Target:  5'- gGCGCGgaCCggggucggGCCCaCGGCgCcgaggGUGGGCGCg -3'
miRNA:   3'- -CGCGC--GGag------CGGG-GCCG-G-----UACCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.