miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 613 0.66 0.465618
Target:  5'- cGCGCcggccccuuccGCUUC-CCCCGGacgugacgccggcuUCcgGGGCGCg -3'
miRNA:   3'- -CGCG-----------CGGAGcGGGGCC--------------GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 692 0.69 0.343091
Target:  5'- gGCGCGCCgagccUGCCCCuuccgucgcaccgggGGuCCGcGGGCGg -3'
miRNA:   3'- -CGCGCGGa----GCGGGG---------------CC-GGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 2165 0.66 0.485954
Target:  5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3'
miRNA:   3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2203 0.67 0.393817
Target:  5'- cGCGgGCCggugggucuccacggCGcCCCCGGCg--GcGGCGCg -3'
miRNA:   3'- -CGCgCGGa--------------GC-GGGGCCGguaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2374 0.68 0.385161
Target:  5'- gGCGCGCaaCUCGgCCggcaGGCCcucgGGGcCGCg -3'
miRNA:   3'- -CGCGCG--GAGCgGGg---CCGGua--CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 2459 0.66 0.503975
Target:  5'- gGgGCGCCgaGCCCCcagcgguuGGCCGcGcGGUGCc -3'
miRNA:   3'- -CgCGCGGagCGGGG--------CCGGUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2682 0.67 0.393025
Target:  5'- -gGCGCagCGgCUCGGCCccgGGGUGCa -3'
miRNA:   3'- cgCGCGgaGCgGGGCCGGua-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2779 0.68 0.385161
Target:  5'- cGCGCGgagCUCGCggcaCCCgGGCCAgcgcacGGCGCa -3'
miRNA:   3'- -CGCGCg--GAGCG----GGG-CCGGUac----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 3110 0.68 0.385161
Target:  5'- gGC-CGCCgcggCGCggguCCCaGGCCGggcgcgGGGCGCc -3'
miRNA:   3'- -CGcGCGGa---GCG----GGG-CCGGUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 3681 0.67 0.442322
Target:  5'- gGgGCGgCggGCCCCGGgCGcGcGGCGCu -3'
miRNA:   3'- -CgCGCgGagCGGGGCCgGUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 3871 0.67 0.400991
Target:  5'- gGgGCGCCcgcCGCCgCCGGCgcc-GGCGCu -3'
miRNA:   3'- -CgCGCGGa--GCGG-GGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 3970 0.67 0.433863
Target:  5'- cGCGCggcgGCCUCggcgagccgGCCgCGGCCAcguuggccgGGGCGa -3'
miRNA:   3'- -CGCG----CGGAG---------CGGgGCCGGUa--------CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 4179 0.69 0.337358
Target:  5'- aGCGCGgccgucaCCUCcucgaggcaggcggGCCCgagggCGGCCG-GGGCGCg -3'
miRNA:   3'- -CGCGC-------GGAG--------------CGGG-----GCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 4364 0.68 0.385161
Target:  5'- gGCGCagaggGCCUCGacggucgccuCCCCGGCgCggGGGUccGCg -3'
miRNA:   3'- -CGCG-----CGGAGC----------GGGGCCG-GuaCCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 4584 0.7 0.29019
Target:  5'- aCGCuGCCggugaugaaggaGCCgUGGCCGUgGGGCGCg -3'
miRNA:   3'- cGCG-CGGag----------CGGgGCCGGUA-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 4697 0.67 0.41723
Target:  5'- ---gGCCUCGCCggCGGCCccgcuguagAUGaGGCGCa -3'
miRNA:   3'- cgcgCGGAGCGGg-GCCGG---------UAC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 5097 0.69 0.32889
Target:  5'- cGgGCGCCggcggagacgguggCGgCCCGGCgCGggcgagugGGGCGCc -3'
miRNA:   3'- -CgCGCGGa-------------GCgGGGCCG-GUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 5634 0.69 0.333104
Target:  5'- cGC-CGCCgggCGCCgagaCCGGCCcgGcGGCGg -3'
miRNA:   3'- -CGcGCGGa--GCGG----GGCCGGuaC-CCGCg -5'
29375 5' -65.6 NC_006151.1 + 5732 0.66 0.459516
Target:  5'- gGCGCcgggguccgagGCCgCGCCgCCGGCCc-GGGCu- -3'
miRNA:   3'- -CGCG-----------CGGaGCGG-GGCCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 6124 0.71 0.2563
Target:  5'- gGCG-GCCUCgugGCUCCGGCCGcGGcCGCg -3'
miRNA:   3'- -CGCgCGGAG---CGGGGCCGGUaCCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.