Results 1 - 20 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 613 | 0.66 | 0.465618 |
Target: 5'- cGCGCcggccccuuccGCUUC-CCCCGGacgugacgccggcuUCcgGGGCGCg -3' miRNA: 3'- -CGCG-----------CGGAGcGGGGCC--------------GGuaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 692 | 0.69 | 0.343091 |
Target: 5'- gGCGCGCCgagccUGCCCCuuccgucgcaccgggGGuCCGcGGGCGg -3' miRNA: 3'- -CGCGCGGa----GCGGGG---------------CC-GGUaCCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2165 | 0.66 | 0.485954 |
Target: 5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3' miRNA: 3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2203 | 0.67 | 0.393817 |
Target: 5'- cGCGgGCCggugggucuccacggCGcCCCCGGCg--GcGGCGCg -3' miRNA: 3'- -CGCgCGGa--------------GC-GGGGCCGguaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2374 | 0.68 | 0.385161 |
Target: 5'- gGCGCGCaaCUCGgCCggcaGGCCcucgGGGcCGCg -3' miRNA: 3'- -CGCGCG--GAGCgGGg---CCGGua--CCC-GCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2459 | 0.66 | 0.503975 |
Target: 5'- gGgGCGCCgaGCCCCcagcgguuGGCCGcGcGGUGCc -3' miRNA: 3'- -CgCGCGGagCGGGG--------CCGGUaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2682 | 0.67 | 0.393025 |
Target: 5'- -gGCGCagCGgCUCGGCCccgGGGUGCa -3' miRNA: 3'- cgCGCGgaGCgGGGCCGGua-CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2779 | 0.68 | 0.385161 |
Target: 5'- cGCGCGgagCUCGCggcaCCCgGGCCAgcgcacGGCGCa -3' miRNA: 3'- -CGCGCg--GAGCG----GGG-CCGGUac----CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 3110 | 0.68 | 0.385161 |
Target: 5'- gGC-CGCCgcggCGCggguCCCaGGCCGggcgcgGGGCGCc -3' miRNA: 3'- -CGcGCGGa---GCG----GGG-CCGGUa-----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 3681 | 0.67 | 0.442322 |
Target: 5'- gGgGCGgCggGCCCCGGgCGcGcGGCGCu -3' miRNA: 3'- -CgCGCgGagCGGGGCCgGUaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 3871 | 0.67 | 0.400991 |
Target: 5'- gGgGCGCCcgcCGCCgCCGGCgcc-GGCGCu -3' miRNA: 3'- -CgCGCGGa--GCGG-GGCCGguacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 3970 | 0.67 | 0.433863 |
Target: 5'- cGCGCggcgGCCUCggcgagccgGCCgCGGCCAcguuggccgGGGCGa -3' miRNA: 3'- -CGCG----CGGAG---------CGGgGCCGGUa--------CCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 4179 | 0.69 | 0.337358 |
Target: 5'- aGCGCGgccgucaCCUCcucgaggcaggcggGCCCgagggCGGCCG-GGGCGCg -3' miRNA: 3'- -CGCGC-------GGAG--------------CGGG-----GCCGGUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 4364 | 0.68 | 0.385161 |
Target: 5'- gGCGCagaggGCCUCGacggucgccuCCCCGGCgCggGGGUccGCg -3' miRNA: 3'- -CGCG-----CGGAGC----------GGGGCCG-GuaCCCG--CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 4584 | 0.7 | 0.29019 |
Target: 5'- aCGCuGCCggugaugaaggaGCCgUGGCCGUgGGGCGCg -3' miRNA: 3'- cGCG-CGGag----------CGGgGCCGGUA-CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 4697 | 0.67 | 0.41723 |
Target: 5'- ---gGCCUCGCCggCGGCCccgcuguagAUGaGGCGCa -3' miRNA: 3'- cgcgCGGAGCGGg-GCCGG---------UAC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 5097 | 0.69 | 0.32889 |
Target: 5'- cGgGCGCCggcggagacgguggCGgCCCGGCgCGggcgagugGGGCGCc -3' miRNA: 3'- -CgCGCGGa-------------GCgGGGCCG-GUa-------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 5634 | 0.69 | 0.333104 |
Target: 5'- cGC-CGCCgggCGCCgagaCCGGCCcgGcGGCGg -3' miRNA: 3'- -CGcGCGGa--GCGG----GGCCGGuaC-CCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 5732 | 0.66 | 0.459516 |
Target: 5'- gGCGCcgggguccgagGCCgCGCCgCCGGCCc-GGGCu- -3' miRNA: 3'- -CGCG-----------CGGaGCGG-GGCCGGuaCCCGcg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 6124 | 0.71 | 0.2563 |
Target: 5'- gGCG-GCCUCgugGCUCCGGCCGcGGcCGCg -3' miRNA: 3'- -CGCgCGGAG---CGGGGCCGGUaCCcGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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