miRNA display CGI


Results 41 - 60 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 82697 0.71 0.351372
Target:  5'- gCGGCccCCGCGAGgGCCaGGAgGCCc- -3'
miRNA:   3'- -GCCGa-GGCGCUCgUGGaCCUgCGGca -5'
29376 5' -62.6 NC_006151.1 + 90630 0.71 0.351372
Target:  5'- gCGGC-CCGCGGGCGCUUGG-CGaugggCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGGACCuGCg----GCA- -5'
29376 5' -62.6 NC_006151.1 + 85073 0.71 0.343941
Target:  5'- aGGC-CUGCGGGCGCCUGuACGUgGg -3'
miRNA:   3'- gCCGaGGCGCUCGUGGACcUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 106942 0.7 0.374342
Target:  5'- -aGCUCCugggGCGAGCGCCUGcuGGCGCuCGa -3'
miRNA:   3'- gcCGAGG----CGCUCGUGGAC--CUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 50021 0.7 0.382222
Target:  5'- gCGGC-CCGCGcGGCGCCcccGGGCGCgGc -3'
miRNA:   3'- -GCCGaGGCGC-UCGUGGa--CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 82155 0.7 0.398309
Target:  5'- gCGGCUCCagguccgaGcCGAGCGCCggGGGCGCg-- -3'
miRNA:   3'- -GCCGAGG--------C-GCUCGUGGa-CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 100694 0.7 0.390211
Target:  5'- -cGCUCCGCGAG-ACCUGGaccgagGCGCgCGa -3'
miRNA:   3'- gcCGAGGCGCUCgUGGACC------UGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 139081 0.7 0.390211
Target:  5'- gGGCUCCGCcuggGGGCGCgcaUGG-CGCUGUu -3'
miRNA:   3'- gCCGAGGCG----CUCGUGg--ACCuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 54643 0.7 0.382222
Target:  5'- gCGGCggCGCGAGCGCUgcgUGGACGagcaCGa -3'
miRNA:   3'- -GCCGagGCGCUCGUGG---ACCUGCg---GCa -5'
29376 5' -62.6 NC_006151.1 + 17708 0.7 0.374342
Target:  5'- aGGCUgCUGUGuGCGCCcgGGuGCGCCGg -3'
miRNA:   3'- gCCGA-GGCGCuCGUGGa-CC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 82612 0.7 0.374342
Target:  5'- gGGCccgCgCGCGGGCGCCgcggUGGGCGCgGg -3'
miRNA:   3'- gCCGa--G-GCGCUCGUGG----ACCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 38222 0.7 0.374342
Target:  5'- cCGcGC-CCGCGAGgcCGCCUGGAccuaCGCCGc -3'
miRNA:   3'- -GC-CGaGGCGCUC--GUGGACCU----GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 106766 0.7 0.382222
Target:  5'- aGcGCgacgCgCGUGAGCGCCUGGACcugGCCGc -3'
miRNA:   3'- gC-CGa---G-GCGCUCGUGGACCUG---CGGCa -5'
29376 5' -62.6 NC_006151.1 + 68266 0.7 0.358916
Target:  5'- gCGGCgacggUCGCG-GCGCC-GGGCGCCa- -3'
miRNA:   3'- -GCCGa----GGCGCuCGUGGaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 52384 0.7 0.382222
Target:  5'- gGGC-CCGCGGGgGCggcGGGCGCCGc -3'
miRNA:   3'- gCCGaGGCGCUCgUGga-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 122385 0.7 0.366573
Target:  5'- aGGCgcgCCGCGGGCGCgcgCUGGcggcgcucgcCGCCGUg -3'
miRNA:   3'- gCCGa--GGCGCUCGUG---GACCu---------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 112602 0.69 0.414823
Target:  5'- aGGCcgCCGCG-GCGCCgcuGGCGCUGg -3'
miRNA:   3'- gCCGa-GGCGCuCGUGGac-CUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 61866 0.69 0.405688
Target:  5'- -uGCUCgGCGcgucuGCGCCUGGACccuccagGCCGUg -3'
miRNA:   3'- gcCGAGgCGCu----CGUGGACCUG-------CGGCA- -5'
29376 5' -62.6 NC_006151.1 + 20387 0.69 0.406513
Target:  5'- aGGgUCC-CGGGCACCggGGucauCGCCGUc -3'
miRNA:   3'- gCCgAGGcGCUCGUGGa-CCu---GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 106658 0.69 0.418176
Target:  5'- gCGGCgcacgugcgcgaggCCGCGGcgcucggcGCGCC-GGGCGCCGg -3'
miRNA:   3'- -GCCGa-------------GGCGCU--------CGUGGaCCUGCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.