miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 39911 0.72 0.308497
Target:  5'- -uGCgCCGCGGGCugCUGGAgcccgaCGCCGa -3'
miRNA:   3'- gcCGaGGCGCUCGugGACCU------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 39966 0.66 0.608629
Target:  5'- gGGCgccgucgccgCCGCGGGCGCCc---CGCCGg -3'
miRNA:   3'- gCCGa---------GGCGCUCGUGGaccuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 40030 0.68 0.512522
Target:  5'- -aGCgUCCGCGc-CGCCgccggGGGCGCCGUg -3'
miRNA:   3'- gcCG-AGGCGCucGUGGa----CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 40068 0.82 0.059921
Target:  5'- cCGGC-CCGCGGGgGCCUcGGGCGCCGg -3'
miRNA:   3'- -GCCGaGGCGCUCgUGGA-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 44166 0.67 0.521897
Target:  5'- aCGuGCccCUGgGAGCACCgcgGGuCGCCGUc -3'
miRNA:   3'- -GC-CGa-GGCgCUCGUGGa--CCuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 49841 0.66 0.579357
Target:  5'- aCGGCggCgGCGGGCccGCgCUGGGCGCagcaCGUg -3'
miRNA:   3'- -GCCGa-GgCGCUCG--UG-GACCUGCG----GCA- -5'
29376 5' -62.6 NC_006151.1 + 50021 0.7 0.382222
Target:  5'- gCGGC-CCGCGcGGCGCCcccGGGCGCgGc -3'
miRNA:   3'- -GCCGaGGCGC-UCGUGGa--CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 50254 0.72 0.301752
Target:  5'- gCGGCgCCaUGAGCACCUucGGACGCgCGUc -3'
miRNA:   3'- -GCCGaGGcGCUCGUGGA--CCUGCG-GCA- -5'
29376 5' -62.6 NC_006151.1 + 52384 0.7 0.382222
Target:  5'- gGGC-CCGCGGGgGCggcGGGCGCCGc -3'
miRNA:   3'- gCCGaGGCGCUCgUGga-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 52481 0.68 0.512522
Target:  5'- aGGCcgCCGUGAcgGCCUcGGGCGCCa- -3'
miRNA:   3'- gCCGa-GGCGCUcgUGGA-CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 52794 0.73 0.257712
Target:  5'- gCGGCUCUGCGAGUAgUUGGugauGCgGCCGg -3'
miRNA:   3'- -GCCGAGGCGCUCGUgGACC----UG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 53571 0.68 0.503217
Target:  5'- uGGCUccCCGCGAGCAC----GCGCCGc -3'
miRNA:   3'- gCCGA--GGCGCUCGUGgaccUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 53976 0.66 0.598847
Target:  5'- gCGGCgccUCCGCGGGCGucgcggcgagcuCCcGGACGCg-- -3'
miRNA:   3'- -GCCG---AGGCGCUCGU------------GGaCCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 54643 0.7 0.382222
Target:  5'- gCGGCggCGCGAGCGCUgcgUGGACGagcaCGa -3'
miRNA:   3'- -GCCGagGCGCUCGUGG---ACCUGCg---GCa -5'
29376 5' -62.6 NC_006151.1 + 55012 0.68 0.512522
Target:  5'- gGGCgcaagcCCGCcgagGGGCACCcGGccgGCGCCGUg -3'
miRNA:   3'- gCCGa-----GGCG----CUCGUGGaCC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 55077 0.66 0.608629
Target:  5'- gGGCUcggCCGCGGcGCGCCUcGuGCGCCu- -3'
miRNA:   3'- gCCGA---GGCGCU-CGUGGA-CcUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 55218 0.67 0.550397
Target:  5'- gGGCUU--CGGGCACCacGGCGCCGg -3'
miRNA:   3'- gCCGAGgcGCUCGUGGacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 55398 0.69 0.423236
Target:  5'- gCGGCgccugCGCGAGCAggcCCUGcGCGCCGc -3'
miRNA:   3'- -GCCGag---GCGCUCGU---GGACcUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 55916 0.71 0.351372
Target:  5'- gCGGCUCCGCGA-----UGGAgGCCGUg -3'
miRNA:   3'- -GCCGAGGCGCUcguggACCUgCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 56129 0.67 0.559043
Target:  5'- aGGCcuUCCGCGGGUucGCCUucgcgguggucacGGcCGCCGa -3'
miRNA:   3'- gCCG--AGGCGCUCG--UGGA-------------CCuGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.