miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 19446 0.67 0.540839
Target:  5'- gCGGCUcgcgcuggagCCGCG-GCACCUcGGGCGgCa- -3'
miRNA:   3'- -GCCGA----------GGCGCuCGUGGA-CCUGCgGca -5'
29376 5' -62.6 NC_006151.1 + 20141 0.72 0.288604
Target:  5'- gGGCgCCGCGggggcGGCGCgUGGAcCGCCGg -3'
miRNA:   3'- gCCGaGGCGC-----UCGUGgACCU-GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 20387 0.69 0.406513
Target:  5'- aGGgUCC-CGGGCACCggGGucauCGCCGUc -3'
miRNA:   3'- gCCgAGGcGCUCGUGGa-CCu---GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 20979 0.66 0.589087
Target:  5'- gGGCgcgUCGcCGGGCACgaGGACGgCGc -3'
miRNA:   3'- gCCGa--GGC-GCUCGUGgaCCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 21358 0.76 0.164356
Target:  5'- aCGGCUCCGCGGGCugCggccacccgcUGGGCacgacgGCCGg -3'
miRNA:   3'- -GCCGAGGCGCUCGugG----------ACCUG------CGGCa -5'
29376 5' -62.6 NC_006151.1 + 23905 0.67 0.540839
Target:  5'- gGGCgucggUCGCGGGC-CCgacgGGcCGCCGg -3'
miRNA:   3'- gCCGa----GGCGCUCGuGGa---CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 24456 0.72 0.308497
Target:  5'- gCGGUcgCgCGCGAGCACCUcggGGGCGuuGg -3'
miRNA:   3'- -GCCGa-G-GCGCUCGUGGA---CCUGCggCa -5'
29376 5' -62.6 NC_006151.1 + 24494 0.66 0.579357
Target:  5'- uGGUcCCgGCGAGC-CCguaaaaguUGGGCGCCGc -3'
miRNA:   3'- gCCGaGG-CGCUCGuGG--------ACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 25092 0.66 0.617446
Target:  5'- cCGGCgucggCCauuguugcugcguGCGAGCGCUgggcgUGGACGCgCGa -3'
miRNA:   3'- -GCCGa----GG-------------CGCUCGUGG-----ACCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 27172 0.69 0.440365
Target:  5'- aGGCgCCGCGugucggGGCGCCaGGGgGCCGc -3'
miRNA:   3'- gCCGaGGCGC------UCGUGGaCCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 28825 0.66 0.608629
Target:  5'- cCGGCcaaUGCGGGCcCCggGGACGCgGg -3'
miRNA:   3'- -GCCGag-GCGCUCGuGGa-CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 29068 0.68 0.512522
Target:  5'- gCGGCgCCGCGGGC-CCcGaGACgGCCGc -3'
miRNA:   3'- -GCCGaGGCGCUCGuGGaC-CUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 31341 0.66 0.579357
Target:  5'- uCGGCgCCGUGGGCccgACCccGGuccGCGCCGg -3'
miRNA:   3'- -GCCGaGGCGCUCG---UGGa-CC---UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 31593 0.67 0.521897
Target:  5'- gCGcGCUCCGCGcucccccGcCGCCUGGgcggggaugccGCGCCGg -3'
miRNA:   3'- -GC-CGAGGCGCu------C-GUGGACC-----------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 31683 0.69 0.430895
Target:  5'- gGGCcgggCCGcCGAGCcgGCCgcgccauUGGGCGCCGg -3'
miRNA:   3'- gCCGa---GGC-GCUCG--UGG-------ACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 33206 0.67 0.540839
Target:  5'- cCGGCgcccCCG-GAGCACgCgGGGCGCCc- -3'
miRNA:   3'- -GCCGa---GGCgCUCGUG-GaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 37954 0.66 0.628234
Target:  5'- gCGuGCcCCGCGAGCuggcGGACGCCu- -3'
miRNA:   3'- -GC-CGaGGCGCUCGuggaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 38222 0.7 0.374342
Target:  5'- cCGcGC-CCGCGAGgcCGCCUGGAccuaCGCCGc -3'
miRNA:   3'- -GC-CGaGGCGCUC--GUGGACCU----GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 39340 0.67 0.521897
Target:  5'- gCGGCUCgGCGcGGCGC---GGCGCCGg -3'
miRNA:   3'- -GCCGAGgCGC-UCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 39864 0.66 0.598847
Target:  5'- cCGaGCUCCGCG-GCcCCgaGGGCcuGCCGg -3'
miRNA:   3'- -GC-CGAGGCGCuCGuGGa-CCUG--CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.