miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 52794 0.73 0.257712
Target:  5'- gCGGCUCUGCGAGUAgUUGGugauGCgGCCGg -3'
miRNA:   3'- -GCCGAGGCGCUCGUgGACC----UG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 127843 0.73 0.257712
Target:  5'- gCGGCgUCGCGGcuGCGCCggaggGGGCGCCGc -3'
miRNA:   3'- -GCCGaGGCGCU--CGUGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 102419 0.73 0.263666
Target:  5'- gCGGC-CCGCGAacgaggccauGCACC-GGGCGCUGg -3'
miRNA:   3'- -GCCGaGGCGCU----------CGUGGaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 122948 0.73 0.263666
Target:  5'- aCGGCggcgCCGCGGGgGgCgcGGACGCCGg -3'
miRNA:   3'- -GCCGa---GGCGCUCgUgGa-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 122462 0.73 0.263666
Target:  5'- aCGGCggCgGCGGGCGCCgaggccggGGACGCgGg -3'
miRNA:   3'- -GCCGa-GgCGCUCGUGGa-------CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 17296 0.72 0.2822
Target:  5'- gGGCUCCcCGGGCuucgagccguccGCCgggGGGCGCCGc -3'
miRNA:   3'- gCCGAGGcGCUCG------------UGGa--CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 20141 0.72 0.288604
Target:  5'- gGGCgCCGCGggggcGGCGCgUGGAcCGCCGg -3'
miRNA:   3'- gCCGaGGCGC-----UCGUGgACCU-GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 120358 0.72 0.288604
Target:  5'- gGGCU-CGCGGGCGCCUaccagcgcccGGACacgGCCGUg -3'
miRNA:   3'- gCCGAgGCGCUCGUGGA----------CCUG---CGGCA- -5'
29376 5' -62.6 NC_006151.1 + 83624 0.72 0.288604
Target:  5'- aCGGCgUCGCGAagGCgGCCUGGugcuGCGCCGUg -3'
miRNA:   3'- -GCCGaGGCGCU--CG-UGGACC----UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 139910 0.72 0.295121
Target:  5'- aCGGCUuccgcgCCGCGGGCucgucGCCgUGGGcCGCCGUc -3'
miRNA:   3'- -GCCGA------GGCGCUCG-----UGG-ACCU-GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 118195 0.72 0.301752
Target:  5'- cCGGCUUCGcCGGGCACgUGGcCGUgGUg -3'
miRNA:   3'- -GCCGAGGC-GCUCGUGgACCuGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 50254 0.72 0.301752
Target:  5'- gCGGCgCCaUGAGCACCUucGGACGCgCGUc -3'
miRNA:   3'- -GCCGaGGcGCUCGUGGA--CCUGCG-GCA- -5'
29376 5' -62.6 NC_006151.1 + 77012 0.72 0.308497
Target:  5'- uGGC-CCGCGAGC-CgUGGAgCGCCa- -3'
miRNA:   3'- gCCGaGGCGCUCGuGgACCU-GCGGca -5'
29376 5' -62.6 NC_006151.1 + 24456 0.72 0.308497
Target:  5'- gCGGUcgCgCGCGAGCACCUcggGGGCGuuGg -3'
miRNA:   3'- -GCCGa-G-GCGCUCGUGGA---CCUGCggCa -5'
29376 5' -62.6 NC_006151.1 + 39911 0.72 0.308497
Target:  5'- -uGCgCCGCGGGCugCUGGAgcccgaCGCCGa -3'
miRNA:   3'- gcCGaGGCGCUCGugGACCU------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103484 0.71 0.315357
Target:  5'- gCGGCgCUGUG-GCGCCUGGugGCgCGc -3'
miRNA:   3'- -GCCGaGGCGCuCGUGGACCugCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 100214 0.71 0.32942
Target:  5'- uGGCcacggCCGCGGGCGCC--GugGCCGa -3'
miRNA:   3'- gCCGa----GGCGCUCGUGGacCugCGGCa -5'
29376 5' -62.6 NC_006151.1 + 85073 0.71 0.343941
Target:  5'- aGGC-CUGCGGGCGCCUGuACGUgGg -3'
miRNA:   3'- gCCGaGGCGCUCGUGGACcUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 107090 0.71 0.343941
Target:  5'- uGGCggugUCGCGcGUGCuCUGGGCGCCGc -3'
miRNA:   3'- gCCGa---GGCGCuCGUG-GACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 119451 0.71 0.351372
Target:  5'- uGGg-CCGCG-GCgACgUGGACGCCGUg -3'
miRNA:   3'- gCCgaGGCGCuCG-UGgACCUGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.