miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 136597 1.06 0.001162
Target:  5'- gCGGCUCCGCGAGCACCUGGACGCCGUc -3'
miRNA:   3'- -GCCGAGGCGCUCGUGGACCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 40068 0.82 0.059921
Target:  5'- cCGGC-CCGCGGGgGCCUcGGGCGCCGg -3'
miRNA:   3'- -GCCGaGGCGCUCgUGGA-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 139564 0.8 0.083686
Target:  5'- gCGGCgcccggUCCGCGAGCGCCUGGgcucGCGCCc- -3'
miRNA:   3'- -GCCG------AGGCGCUCGUGGACC----UGCGGca -5'
29376 5' -62.6 NC_006151.1 + 71090 0.8 0.083686
Target:  5'- aCGGCgCCGCGGGCGC--GGGCGCCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGgaCCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78131 0.8 0.088062
Target:  5'- gCGGCgggCCGCGGGCGCCUcGGAcgacgccucggcCGCCGUg -3'
miRNA:   3'- -GCCGa--GGCGCUCGUGGA-CCU------------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78406 0.8 0.092656
Target:  5'- gCGGCUcucgggCCGCGAGCGCCgUGGcccACGCCGUc -3'
miRNA:   3'- -GCCGA------GGCGCUCGUGG-ACC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 124916 0.79 0.099219
Target:  5'- aCGGCUCCuuccgcuucacgucGCGGGC-CCUGGGCGCCu- -3'
miRNA:   3'- -GCCGAGG--------------CGCUCGuGGACCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 131525 0.78 0.110306
Target:  5'- aCGGCUggaagcgcugcucUUGCGAGCGCCUcGGGCGCCGc -3'
miRNA:   3'- -GCCGA-------------GGCGCUCGUGGA-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73218 0.76 0.160399
Target:  5'- aGGC-CCGCGGGCACCUgGGGCagcaucugGCCGa -3'
miRNA:   3'- gCCGaGGCGCUCGUGGA-CCUG--------CGGCa -5'
29376 5' -62.6 NC_006151.1 + 106634 0.76 0.160399
Target:  5'- gCGGUcaC-CGAGCGCCUGGACGCCGc -3'
miRNA:   3'- -GCCGagGcGCUCGUGGACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 21358 0.76 0.164356
Target:  5'- aCGGCUCCGCGGGCugCggccacccgcUGGGCacgacgGCCGg -3'
miRNA:   3'- -GCCGAGGCGCUCGugG----------ACCUG------CGGCa -5'
29376 5' -62.6 NC_006151.1 + 85218 0.76 0.168402
Target:  5'- gCGGgUCCcCGAGUACCUGGACGCg-- -3'
miRNA:   3'- -GCCgAGGcGCUCGUGGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 3951 0.75 0.19459
Target:  5'- gGGCUCCGCGGGC-CCgGGcCGCgCGg -3'
miRNA:   3'- gCCGAGGCGCUCGuGGaCCuGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 11039 0.75 0.199286
Target:  5'- cCGGCcggCCGgGGGCccgGCCUGGACGCgGg -3'
miRNA:   3'- -GCCGa--GGCgCUCG---UGGACCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 122548 0.74 0.224271
Target:  5'- cCGGC-CCGCcucgcGGCGCCUGuACGCCGUg -3'
miRNA:   3'- -GCCGaGGCGc----UCGUGGACcUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 673 0.73 0.234989
Target:  5'- gGGCUCCGCGGaucGCAUC-GGcGCGCCGa -3'
miRNA:   3'- gCCGAGGCGCU---CGUGGaCC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 75251 0.73 0.234989
Target:  5'- aGGCgcacugcaccUCCGCGGGCuCCUGGcgcaGCGCCGc -3'
miRNA:   3'- gCCG----------AGGCGCUCGuGGACC----UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 81750 0.73 0.234989
Target:  5'- gCGGCgcggagcuggUCCGCGGGCGCCaccgGGACGCg-- -3'
miRNA:   3'- -GCCG----------AGGCGCUCGUGGa---CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 6234 0.73 0.251868
Target:  5'- gCGGCgCCGgGAGC-CCUGGcugcCGCCGUc -3'
miRNA:   3'- -GCCGaGGCgCUCGuGGACCu---GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 127843 0.73 0.257712
Target:  5'- gCGGCgUCGCGGcuGCGCCggaggGGGCGCCGc -3'
miRNA:   3'- -GCCGaGGCGCU--CGUGGa----CCUGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.