miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 128228 0.69 0.449076
Target:  5'- aCGaGCU-CGUGGGCGCCaGGuCGCCGa -3'
miRNA:   3'- -GC-CGAgGCGCUCGUGGaCCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 127994 0.67 0.521897
Target:  5'- gCGGCUCCGCGucGCGgUcgcgGGGCGgCGg -3'
miRNA:   3'- -GCCGAGGCGCu-CGUgGa---CCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 127843 0.73 0.257712
Target:  5'- gCGGCgUCGCGGcuGCGCCggaggGGGCGCCGc -3'
miRNA:   3'- -GCCGaGGCGCU--CGUGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 127565 0.67 0.521897
Target:  5'- uGGCcgCCGCcGGCGCCUcGuuCGCCGUc -3'
miRNA:   3'- gCCGa-GGCGcUCGUGGA-CcuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 124985 0.68 0.503217
Target:  5'- -uGCagCGCGuGCACCUGGGCGaCUGc -3'
miRNA:   3'- gcCGagGCGCuCGUGGACCUGC-GGCa -5'
29376 5' -62.6 NC_006151.1 + 124916 0.79 0.099219
Target:  5'- aCGGCUCCuuccgcuucacgucGCGGGC-CCUGGGCGCCu- -3'
miRNA:   3'- -GCCGAGG--------------CGCUCGuGGACCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 124035 0.68 0.475764
Target:  5'- aGGCcCCcgacgGCGAGUacggcgACCUGGACGCgCGg -3'
miRNA:   3'- gCCGaGG-----CGCUCG------UGGACCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 123004 0.66 0.579357
Target:  5'- gGGC-CCgGCGcGCccccGCCggcGGACGCCGUg -3'
miRNA:   3'- gCCGaGG-CGCuCG----UGGa--CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 122948 0.73 0.263666
Target:  5'- aCGGCggcgCCGCGGGgGgCgcGGACGCCGg -3'
miRNA:   3'- -GCCGa---GGCGCUCgUgGa-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 122548 0.74 0.224271
Target:  5'- cCGGC-CCGCcucgcGGCGCCUGuACGCCGUg -3'
miRNA:   3'- -GCCGaGGCGc----UCGUGGACcUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 122462 0.73 0.263666
Target:  5'- aCGGCggCgGCGGGCGCCgaggccggGGACGCgGg -3'
miRNA:   3'- -GCCGa-GgCGCUCGUGGa-------CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 122385 0.7 0.366573
Target:  5'- aGGCgcgCCGCGGGCGCgcgCUGGcggcgcucgcCGCCGUg -3'
miRNA:   3'- gCCGa--GGCGCUCGUG---GACCu---------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 120358 0.72 0.288604
Target:  5'- gGGCU-CGCGGGCGCCUaccagcgcccGGACacgGCCGUg -3'
miRNA:   3'- gCCGAgGCGCUCGUGGA----------CCUG---CGGCA- -5'
29376 5' -62.6 NC_006151.1 + 119903 0.68 0.484834
Target:  5'- -aGCUCCGCGAcGCGCUcuacGACGCCa- -3'
miRNA:   3'- gcCGAGGCGCU-CGUGGac--CUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 119451 0.71 0.351372
Target:  5'- uGGg-CCGCG-GCgACgUGGACGCCGUg -3'
miRNA:   3'- gCCgaGGCGCuCG-UGgACCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 119382 0.67 0.550397
Target:  5'- gCGGCUucugcCCGC-AGCugCUGG-CGCgCGUg -3'
miRNA:   3'- -GCCGA-----GGCGcUCGugGACCuGCG-GCA- -5'
29376 5' -62.6 NC_006151.1 + 119022 0.67 0.560006
Target:  5'- cCGuGCUCUccgagGCGGGCGCCaaGGACGgCGg -3'
miRNA:   3'- -GC-CGAGG-----CGCUCGUGGa-CCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 118926 0.68 0.466778
Target:  5'- uGGCgUCCGUcauGAGCGCCgacGcGGCGCUGUc -3'
miRNA:   3'- gCCG-AGGCG---CUCGUGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 118752 0.67 0.521897
Target:  5'- cCGGCggCCGUGccacgcgcgugcGGaACCUGGACGCgGUg -3'
miRNA:   3'- -GCCGa-GGCGC------------UCgUGGACCUGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 118195 0.72 0.301752
Target:  5'- cCGGCUUCGcCGGGCACgUGGcCGUgGUg -3'
miRNA:   3'- -GCCGAGGC-GCUCGUGgACCuGCGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.