miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 139910 0.72 0.295121
Target:  5'- aCGGCUuccgcgCCGCGGGCucgucGCCgUGGGcCGCCGUc -3'
miRNA:   3'- -GCCGA------GGCGCUCG-----UGG-ACCU-GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 139564 0.8 0.083686
Target:  5'- gCGGCgcccggUCCGCGAGCGCCUGGgcucGCGCCc- -3'
miRNA:   3'- -GCCG------AGGCGCUCGUGGACC----UGCGGca -5'
29376 5' -62.6 NC_006151.1 + 139081 0.7 0.390211
Target:  5'- gGGCUCCGCcuggGGGCGCgcaUGG-CGCUGUu -3'
miRNA:   3'- gCCGAGGCG----CUCGUGg--ACCuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 138251 0.66 0.628234
Target:  5'- gGGCgcgaCCGCGcAGCGggUGGugGCCa- -3'
miRNA:   3'- gCCGa---GGCGC-UCGUggACCugCGGca -5'
29376 5' -62.6 NC_006151.1 + 137920 0.66 0.579357
Target:  5'- gCGGCUgCCaCGGGCGCCUgcuccccuuuggGGACGCg-- -3'
miRNA:   3'- -GCCGA-GGcGCUCGUGGA------------CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 137703 0.67 0.569661
Target:  5'- gGGCuUCCGCGuguGCAcgcCCUGccguCGCCGUa -3'
miRNA:   3'- gCCG-AGGCGCu--CGU---GGACcu--GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 137093 0.67 0.550397
Target:  5'- aGGcCUUCGCGGuGCugGCCggGGACGCCu- -3'
miRNA:   3'- gCC-GAGGCGCU-CG--UGGa-CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 136994 0.67 0.540839
Target:  5'- gCGGCgggCgCGCGcGCACggcgCUGGGCGCCc- -3'
miRNA:   3'- -GCCGa--G-GCGCuCGUG----GACCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 136834 0.67 0.540839
Target:  5'- gGGCUCUGCGAcGCgGCCgccGGccucgcGCGCCGc -3'
miRNA:   3'- gCCGAGGCGCU-CG-UGGa--CC------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 136597 1.06 0.001162
Target:  5'- gCGGCUCCGCGAGCACCUGGACGCCGUc -3'
miRNA:   3'- -GCCGAGGCGCUCGUGGACCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 136433 0.66 0.60765
Target:  5'- gCGGCgcacgCCGCgcgcuacgucgacGAGCGCgUGcGCGCCGa -3'
miRNA:   3'- -GCCGa----GGCG-------------CUCGUGgACcUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 133480 0.68 0.512522
Target:  5'- aGGCggCCGCGGGCgucACCUuggcggcgcgggGGGCGCgGg -3'
miRNA:   3'- gCCGa-GGCGCUCG---UGGA------------CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 133345 0.67 0.550397
Target:  5'- cCGGUUCCGCG-GCGgCggUGGugGUgGUg -3'
miRNA:   3'- -GCCGAGGCGCuCGUgG--ACCugCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 132597 0.68 0.516264
Target:  5'- gGGCUCCGCcccGGGCACCcccaGGucgacgcucgcgucCGCCGUc -3'
miRNA:   3'- gCCGAGGCG---CUCGUGGa---CCu-------------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 131525 0.78 0.110306
Target:  5'- aCGGCUggaagcgcugcucUUGCGAGCGCCUcGGGCGCCGc -3'
miRNA:   3'- -GCCGA-------------GGCGCUCGUGGA-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 130928 0.67 0.560006
Target:  5'- gGGC-CCGCGGGgGCggGGGCGgCGg -3'
miRNA:   3'- gCCGaGGCGCUCgUGgaCCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 130630 0.68 0.466778
Target:  5'- gCGGCUCa-CGAGCGCCgccGAgGCCGc -3'
miRNA:   3'- -GCCGAGgcGCUCGUGGac-CUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 130410 0.68 0.466778
Target:  5'- -cGC-CCGCGAGCGCg-GGcGCGCCGa -3'
miRNA:   3'- gcCGaGGCGCUCGUGgaCC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 129192 0.68 0.484834
Target:  5'- aCGGCcgCCGUcAGCACCUccccGGGgGCCGc -3'
miRNA:   3'- -GCCGa-GGCGcUCGUGGA----CCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 129058 0.66 0.608629
Target:  5'- gCGGCUCCGcCGAGC------ACGCCGUg -3'
miRNA:   3'- -GCCGAGGC-GCUCGuggaccUGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.