miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 57536 0.68 0.512522
Target:  5'- cCGGCgcggCCGCGGGCACgU---CGCCGa -3'
miRNA:   3'- -GCCGa---GGCGCUCGUGgAccuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 57722 0.68 0.503217
Target:  5'- cCGGCUugaCCGCGcGCGCCcgcacGGcGCGCCGc -3'
miRNA:   3'- -GCCGA---GGCGCuCGUGGa----CC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 58335 0.67 0.550397
Target:  5'- cCGGcCUCCGCGuaGGCGCgcgcgaagCUGGucCGCCGc -3'
miRNA:   3'- -GCC-GAGGCGC--UCGUG--------GACCu-GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 59353 0.67 0.560006
Target:  5'- aGGg-CCGCGcGCACg-GGGCGCCGc -3'
miRNA:   3'- gCCgaGGCGCuCGUGgaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 59506 0.67 0.540839
Target:  5'- gCGGcCUCCGCGAcGCGCgCgcaGCGCCGc -3'
miRNA:   3'- -GCC-GAGGCGCU-CGUG-GaccUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 59653 0.66 0.628234
Target:  5'- aCGcGCUCgcUGCGcAGCGCCUcggGGACGCgCGc -3'
miRNA:   3'- -GC-CGAG--GCGC-UCGUGGA---CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 60215 0.69 0.440365
Target:  5'- gGGCUcgCCGCGcGCGCC-GGA-GCCGUc -3'
miRNA:   3'- gCCGA--GGCGCuCGUGGaCCUgCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 61866 0.69 0.405688
Target:  5'- -uGCUCgGCGcgucuGCGCCUGGACccuccagGCCGUg -3'
miRNA:   3'- gcCGAGgCGCu----CGUGGACCUG-------CGGCA- -5'
29376 5' -62.6 NC_006151.1 + 64429 0.67 0.550397
Target:  5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3'
miRNA:   3'- gcCGAGGCGCuCGUGgACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 64929 0.69 0.431751
Target:  5'- aCGGCguacUCGCGcgucAGCGCCUGGccGCGCUGc -3'
miRNA:   3'- -GCCGa---GGCGC----UCGUGGACC--UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 65191 0.67 0.569661
Target:  5'- gCGGgUCCGCGAGCGCgCUGcGCGa-GUu -3'
miRNA:   3'- -GCCgAGGCGCUCGUG-GACcUGCggCA- -5'
29376 5' -62.6 NC_006151.1 + 68266 0.7 0.358916
Target:  5'- gCGGCgacggUCGCG-GCGCC-GGGCGCCa- -3'
miRNA:   3'- -GCCGa----GGCGCuCGUGGaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 68850 0.67 0.559043
Target:  5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3'
miRNA:   3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 68955 0.68 0.512522
Target:  5'- gCGGCU-CGCGGcGCACggaCUcgcGGACGCCGg -3'
miRNA:   3'- -GCCGAgGCGCU-CGUG---GA---CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 69141 0.67 0.550397
Target:  5'- gGGCg-CGCGGGUGCUc-GACGCCGUg -3'
miRNA:   3'- gCCGagGCGCUCGUGGacCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 69458 0.67 0.569661
Target:  5'- uCGcGCgCCGCGGGCGCC-GGcaccguCGCCGc -3'
miRNA:   3'- -GC-CGaGGCGCUCGUGGaCCu-----GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 69635 0.66 0.598847
Target:  5'- uCGGCgucCCGCGcgugcGGCGCCgccgGGuCGUCGa -3'
miRNA:   3'- -GCCGa--GGCGC-----UCGUGGa---CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 71090 0.8 0.083686
Target:  5'- aCGGCgCCGCGGGCGC--GGGCGCCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGgaCCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 71582 0.69 0.449076
Target:  5'- gGGCauccUCCGCGGGCGCC---GCGUCGUc -3'
miRNA:   3'- gCCG----AGGCGCUCGUGGaccUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 71965 0.66 0.579357
Target:  5'- uCGGCguugUCGCGgugcggcgggGGCAgCUGGuaGCGCCGg -3'
miRNA:   3'- -GCCGa---GGCGC----------UCGUgGACC--UGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.