miRNA display CGI


Results 81 - 100 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 53282 0.66 0.577945
Target:  5'- cGCGUGCuCGAagCGCGaCuCGAGcgaguccgucugcGUGGGCg -3'
miRNA:   3'- aCGCGCG-GCUg-GCGC-G-GCUC-------------UACCCG- -5'
29377 3' -62.8 NC_006151.1 + 76972 0.66 0.577945
Target:  5'- cGCGCGUagaaGGCCagcgcggugaggaGCGCCGcGA-GGGUg -3'
miRNA:   3'- aCGCGCGg---CUGG-------------CGCGGCuCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 69686 0.66 0.576011
Target:  5'- aGCuGCGCCucgccgucgaugguGGCCGcCGCCGg---GGGCa -3'
miRNA:   3'- aCG-CGCGG--------------CUGGC-GCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 30932 0.67 0.573112
Target:  5'- cGCGCGgaUCGcCCGCGCgguaucgcggcggccCGGGAgagcGGGCg -3'
miRNA:   3'- aCGCGC--GGCuGGCGCG---------------GCUCUa---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 11791 0.67 0.569252
Target:  5'- gGCGCGUgGGCgagaGgGgCGGGGUGGGg -3'
miRNA:   3'- aCGCGCGgCUGg---CgCgGCUCUACCCg -5'
29377 3' -62.8 NC_006151.1 + 83637 0.67 0.569252
Target:  5'- gGCG-GCCugguGCUGCGCCGuGAcgaGGGCc -3'
miRNA:   3'- aCGCgCGGc---UGGCGCGGCuCUa--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 31767 0.67 0.569252
Target:  5'- gGCG-GCgGGCgCGCGCCGGGc--GGCu -3'
miRNA:   3'- aCGCgCGgCUG-GCGCGGCUCuacCCG- -5'
29377 3' -62.8 NC_006151.1 + 37396 0.67 0.569252
Target:  5'- cGCGUccGCuaCGGCgGCGCCGGGGacucccgcgagGGGCu -3'
miRNA:   3'- aCGCG--CG--GCUGgCGCGGCUCUa----------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 68640 0.67 0.569252
Target:  5'- cGCGuCGCCGGCUccacuGCcacgGCCG-GcgGGGCc -3'
miRNA:   3'- aCGC-GCGGCUGG-----CG----CGGCuCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 77989 0.67 0.569252
Target:  5'- aGCGCGC--GCUGCGCgCGAcGGUGGucaGCg -3'
miRNA:   3'- aCGCGCGgcUGGCGCG-GCU-CUACC---CG- -5'
29377 3' -62.8 NC_006151.1 + 95125 0.67 0.569252
Target:  5'- gGCgGCGuuGaggcGCCGCGCCGccGGGUcGGCc -3'
miRNA:   3'- aCG-CGCggC----UGGCGCGGC--UCUAcCCG- -5'
29377 3' -62.8 NC_006151.1 + 139311 0.67 0.569252
Target:  5'- cGCGUGCugcuCGACCGUgcucGCCGGGAUcuuugccaaGGCg -3'
miRNA:   3'- aCGCGCG----GCUGGCG----CGGCUCUAc--------CCG- -5'
29377 3' -62.8 NC_006151.1 + 13754 0.67 0.569252
Target:  5'- cGCGgGCCgGACCGCccccuucCCGGGAcuuGGCa -3'
miRNA:   3'- aCGCgCGG-CUGGCGc------GGCUCUac-CCG- -5'
29377 3' -62.8 NC_006151.1 + 128277 0.67 0.569252
Target:  5'- cGCGCGCagcGCCGCGCgcAGGUacGGGUc -3'
miRNA:   3'- aCGCGCGgc-UGGCGCGgcUCUA--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 109661 0.67 0.569252
Target:  5'- cUGC-CGCC-ACCGCcgcccccucaGCCGcuAUGGGCg -3'
miRNA:   3'- -ACGcGCGGcUGGCG----------CGGCucUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 104650 0.67 0.569252
Target:  5'- gUGCGCGCggccgccgacgCGGCgCGCGCgcucgaCGAGggGGuGCa -3'
miRNA:   3'- -ACGCGCG-----------GCUG-GCGCG------GCUCuaCC-CG- -5'
29377 3' -62.8 NC_006151.1 + 22832 0.67 0.568288
Target:  5'- gGCGCGaggCGAgCGCGCUGcccaggaagcccaGGAgcaGGGCg -3'
miRNA:   3'- aCGCGCg--GCUgGCGCGGC-------------UCUa--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 102899 0.67 0.566361
Target:  5'- cUGCGCcgccucgucgacucGCUGGCgGcCGCCGAGGaGcGGCu -3'
miRNA:   3'- -ACGCG--------------CGGCUGgC-GCGGCUCUaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 21521 0.67 0.566361
Target:  5'- gGCGgGCUcgggcuucggccggGGCCgGgGCCGGGGccUGGGCc -3'
miRNA:   3'- aCGCgCGG--------------CUGG-CgCGGCUCU--ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 121843 0.67 0.559631
Target:  5'- cGCGCGgCGGCUGcCGCUG-GA-GGcGCa -3'
miRNA:   3'- aCGCGCgGCUGGC-GCGGCuCUaCC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.