miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 29047 0.66 0.588609
Target:  5'- aGCGUGCCaagacucgaguuGGCgGCGCCGc---GGGCc -3'
miRNA:   3'- aCGCGCGG------------CUGgCGCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 37940 0.66 0.588609
Target:  5'- cGCGCaGcCCGGCCGCGUgccccgCGAGcu-GGCg -3'
miRNA:   3'- aCGCG-C-GGCUGGCGCG------GCUCuacCCG- -5'
29377 3' -62.8 NC_006151.1 + 117547 0.66 0.588609
Target:  5'- -aCGCGgCGA-CGCGCCGcggccAGAaGGGCu -3'
miRNA:   3'- acGCGCgGCUgGCGCGGC-----UCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 104599 0.66 0.588609
Target:  5'- gGCGgcaGCCG-CgGCGCCGAGAUcuGCc -3'
miRNA:   3'- aCGCg--CGGCuGgCGCGGCUCUAccCG- -5'
29377 3' -62.8 NC_006151.1 + 130101 0.66 0.588609
Target:  5'- cGCGCuccUCGGCCGUGaagcCCGGGuucuggccGUGGGCg -3'
miRNA:   3'- aCGCGc--GGCUGGCGC----GGCUC--------UACCCG- -5'
29377 3' -62.8 NC_006151.1 + 86170 0.66 0.588609
Target:  5'- cGCGCgagaucgugGCCG-CCGCGCUGcccccGgcGGGCc -3'
miRNA:   3'- aCGCG---------CGGCuGGCGCGGCu----CuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 54073 0.66 0.588609
Target:  5'- gGCGCGCgGACCcucuGCGgCG-GcgGcGGCg -3'
miRNA:   3'- aCGCGCGgCUGG----CGCgGCuCuaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 38117 0.66 0.588609
Target:  5'- cGCGauccccgggGCCGGcCCG-GCCGAGcgGcGGCa -3'
miRNA:   3'- aCGCg--------CGGCU-GGCgCGGCUCuaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 52940 0.66 0.578913
Target:  5'- cUGCGCGUCGcCCGCcaccUUGAGGUGcGCg -3'
miRNA:   3'- -ACGCGCGGCuGGCGc---GGCUCUACcCG- -5'
29377 3' -62.8 NC_006151.1 + 7656 0.66 0.578913
Target:  5'- -uCGCGCuCGGCgCGCGCUccGA-GGGCg -3'
miRNA:   3'- acGCGCG-GCUG-GCGCGGcuCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 15038 0.66 0.578913
Target:  5'- gUGCGCGUCcACgGCGCgCGGGGccccGGCg -3'
miRNA:   3'- -ACGCGCGGcUGgCGCG-GCUCUac--CCG- -5'
29377 3' -62.8 NC_006151.1 + 30738 0.66 0.578913
Target:  5'- cGCGgGCCcGgaGUGCCGcgGGcgGGGCg -3'
miRNA:   3'- aCGCgCGGcUggCGCGGC--UCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 55155 0.66 0.578913
Target:  5'- gGUGCGCuCGuACCuCGaCGAGAccgGGGCg -3'
miRNA:   3'- aCGCGCG-GC-UGGcGCgGCUCUa--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 60885 0.66 0.578913
Target:  5'- cGCGCaGCa-GCCGCG-CGAGcaGGGCg -3'
miRNA:   3'- aCGCG-CGgcUGGCGCgGCUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 73294 0.66 0.578913
Target:  5'- gGCGCagguaGUCGuCCGCGuCCGcguccAGcAUGGGCg -3'
miRNA:   3'- aCGCG-----CGGCuGGCGC-GGC-----UC-UACCCG- -5'
29377 3' -62.8 NC_006151.1 + 85239 0.66 0.578913
Target:  5'- cGCGCugaGCCaGgCGCugGCCGAGGgcGGGCg -3'
miRNA:   3'- aCGCG---CGGcUgGCG--CGGCUCUa-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 88805 0.66 0.578913
Target:  5'- cGgGCG-CGAgCGCGUCc-GGUGGGCg -3'
miRNA:   3'- aCgCGCgGCUgGCGCGGcuCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 106427 0.66 0.578913
Target:  5'- cGCGuCGCCGACUGgaccgagggcCGCUucucgGAGAcggagcugUGGGCg -3'
miRNA:   3'- aCGC-GCGGCUGGC----------GCGG-----CUCU--------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 134028 0.66 0.578913
Target:  5'- aGCGCGgCGACgaGCGUcagCGAGAgcccGGCg -3'
miRNA:   3'- aCGCGCgGCUGg-CGCG---GCUCUac--CCG- -5'
29377 3' -62.8 NC_006151.1 + 83365 0.66 0.578913
Target:  5'- cGCGCGCgGGCgcgcagGCGCCGcAGGUgcucguccGGGUc -3'
miRNA:   3'- aCGCGCGgCUGg-----CGCGGC-UCUA--------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.