miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 39985 0.66 0.598334
Target:  5'- gGCGCcccGCCGGCCGUGCUc---UGGGa -3'
miRNA:   3'- aCGCG---CGGCUGGCGCGGcucuACCCg -5'
29377 3' -62.8 NC_006151.1 + 4702 0.66 0.598334
Target:  5'- cGC-CGgCGGCCcCGCUGuAGAUGaGGCg -3'
miRNA:   3'- aCGcGCgGCUGGcGCGGC-UCUAC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 15087 0.66 0.598334
Target:  5'- gGCGCcCCGACaCGCGgCGccucgGGGCc -3'
miRNA:   3'- aCGCGcGGCUG-GCGCgGCucua-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 40087 0.66 0.598334
Target:  5'- gGCGCcgggGCCGGCCcCGgCGAGGacgGGGa -3'
miRNA:   3'- aCGCG----CGGCUGGcGCgGCUCUa--CCCg -5'
29377 3' -62.8 NC_006151.1 + 41479 0.66 0.598334
Target:  5'- aUGaCGaCGgCGACCGCGUggcgCGAGGggagccaaugGGGCg -3'
miRNA:   3'- -AC-GC-GCgGCUGGCGCG----GCUCUa---------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 58329 0.66 0.598334
Target:  5'- gGCGCGCCGGCCuccgcguaggcGCGCgCGaAGcUGGuccGCc -3'
miRNA:   3'- aCGCGCGGCUGG-----------CGCG-GC-UCuACC---CG- -5'
29377 3' -62.8 NC_006151.1 + 59521 0.66 0.598334
Target:  5'- cGCGCGCagcGCCGCG-UGAGGgcccagcgcgcGGGCa -3'
miRNA:   3'- aCGCGCGgc-UGGCGCgGCUCUa----------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 112190 0.66 0.598334
Target:  5'- -uCGCGCCGcGCCcgcaGCGCCuccccGUGGGCg -3'
miRNA:   3'- acGCGCGGC-UGG----CGCGGcuc--UACCCG- -5'
29377 3' -62.8 NC_006151.1 + 104188 0.66 0.598334
Target:  5'- cGCGCGCuCGGCgCcaaCGCCGAGAccgUGaccacGGCg -3'
miRNA:   3'- aCGCGCG-GCUG-Gc--GCGGCUCU---AC-----CCG- -5'
29377 3' -62.8 NC_006151.1 + 69332 0.66 0.598334
Target:  5'- gGCGCGUCG-CCGC-CCGcGAgcgcGGCg -3'
miRNA:   3'- aCGCGCGGCuGGCGcGGCuCUac--CCG- -5'
29377 3' -62.8 NC_006151.1 + 9489 0.66 0.598334
Target:  5'- cGCG-GCCG-CgGCGUgggaGAGcgGGGCg -3'
miRNA:   3'- aCGCgCGGCuGgCGCGg---CUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 81901 0.66 0.598334
Target:  5'- gGCGCGCCGGucgcggCGCGCCGccucGGAgaagacgaaGGCg -3'
miRNA:   3'- aCGCGCGGCUg-----GCGCGGC----UCUac-------CCG- -5'
29377 3' -62.8 NC_006151.1 + 120106 0.66 0.596387
Target:  5'- gUGCuGCGCCG-CCGCGUgGuGGAcaugcucaacggGGGCu -3'
miRNA:   3'- -ACG-CGCGGCuGGCGCGgC-UCUa-----------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 37940 0.66 0.588609
Target:  5'- cGCGCaGcCCGGCCGCGUgccccgCGAGcu-GGCg -3'
miRNA:   3'- aCGCG-C-GGCUGGCGCG------GCUCuacCCG- -5'
29377 3' -62.8 NC_006151.1 + 38117 0.66 0.588609
Target:  5'- cGCGauccccgggGCCGGcCCG-GCCGAGcgGcGGCa -3'
miRNA:   3'- aCGCg--------CGGCU-GGCgCGGCUCuaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 54073 0.66 0.588609
Target:  5'- gGCGCGCgGACCcucuGCGgCG-GcgGcGGCg -3'
miRNA:   3'- aCGCGCGgCUGG----CGCgGCuCuaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 86170 0.66 0.588609
Target:  5'- cGCGCgagaucgugGCCG-CCGCGCUGcccccGgcGGGCc -3'
miRNA:   3'- aCGCG---------CGGCuGGCGCGGCu----CuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 130101 0.66 0.588609
Target:  5'- cGCGCuccUCGGCCGUGaagcCCGGGuucuggccGUGGGCg -3'
miRNA:   3'- aCGCGc--GGCUGGCGC----GGCUC--------UACCCG- -5'
29377 3' -62.8 NC_006151.1 + 104599 0.66 0.588609
Target:  5'- gGCGgcaGCCG-CgGCGCCGAGAUcuGCc -3'
miRNA:   3'- aCGCg--CGGCuGgCGCGGCUCUAccCG- -5'
29377 3' -62.8 NC_006151.1 + 29047 0.66 0.588609
Target:  5'- aGCGUGCCaagacucgaguuGGCgGCGCCGc---GGGCc -3'
miRNA:   3'- aCGCGCGG------------CUGgCGCGGCucuaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.