Results 41 - 60 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 3' | -62.8 | NC_006151.1 | + | 134312 | 0.66 | 0.62762 |
Target: 5'- uUGCaCGCCG-CUGCGCCucgcGccGGGCa -3' miRNA: 3'- -ACGcGCGGCuGGCGCGGcu--CuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 48892 | 0.66 | 0.62762 |
Target: 5'- cGCGCGCCugcGCUG-GCCGAGuaccGcGGCc -3' miRNA: 3'- aCGCGCGGc--UGGCgCGGCUCua--C-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 49254 | 0.66 | 0.62762 |
Target: 5'- gGCGCgGCuCGugCGCGCCGucGUccaGcGGCu -3' miRNA: 3'- aCGCG-CG-GCugGCGCGGCucUA---C-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 128987 | 0.66 | 0.62762 |
Target: 5'- cGCGCGCCaGGCCacgucCGCCGuGAUGc-- -3' miRNA: 3'- aCGCGCGG-CUGGc----GCGGCuCUACccg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 134249 | 0.66 | 0.62762 |
Target: 5'- cGCGgGCUu-UCGCGgCGAGGUGcaGGCg -3' miRNA: 3'- aCGCgCGGcuGGCGCgGCUCUAC--CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 129691 | 0.66 | 0.617846 |
Target: 5'- gGC-CGCCGuggaccGCgGCGCCGAGca-GGCa -3' miRNA: 3'- aCGcGCGGC------UGgCGCGGCUCuacCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 97926 | 0.66 | 0.617846 |
Target: 5'- cGC-CGCCGagGCCGCGCCcgcccucgucGA-GGGCg -3' miRNA: 3'- aCGcGCGGC--UGGCGCGGcu--------CUaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 121509 | 0.66 | 0.608082 |
Target: 5'- aUGgGCGCC--CCGC-CCGAGAaGcGGCu -3' miRNA: 3'- -ACgCGCGGcuGGCGcGGCUCUaC-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 127530 | 0.66 | 0.608082 |
Target: 5'- gGCGCGUCaGCgGgGCCcAGG-GGGCg -3' miRNA: 3'- aCGCGCGGcUGgCgCGGcUCUaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 59451 | 0.66 | 0.608082 |
Target: 5'- cGC-CGCCgcGACCGCgGCCGAGuccaccuccGGCg -3' miRNA: 3'- aCGcGCGG--CUGGCG-CGGCUCuac------CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 89485 | 0.66 | 0.608082 |
Target: 5'- gUGCGCGgCGGCgagccgguaCGCGCgGGuGUGGcGCa -3' miRNA: 3'- -ACGCGCgGCUG---------GCGCGgCUcUACC-CG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 138628 | 0.66 | 0.608082 |
Target: 5'- cGC-CGCCGGgggCGCGCCGGacUGGGa -3' miRNA: 3'- aCGcGCGGCUg--GCGCGGCUcuACCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 139808 | 0.66 | 0.608082 |
Target: 5'- cGCGCGCCGccgucuCCGCGacgcaCGcgcGGGUcGGCg -3' miRNA: 3'- aCGCGCGGCu-----GGCGCg----GC---UCUAcCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 55898 | 0.66 | 0.613939 |
Target: 5'- cGUGCGCCGGgcgaccgagcggcuCCGCgauggagGCCGuGAUGGa- -3' miRNA: 3'- aCGCGCGGCU--------------GGCG-------CGGCuCUACCcg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 96310 | 0.66 | 0.616869 |
Target: 5'- uUGaGCGCCGacugcagGCCGCGCgCGuAGAgcgccGGGUa -3' miRNA: 3'- -ACgCGCGGC-------UGGCGCG-GC-UCUa----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 27626 | 0.66 | 0.617846 |
Target: 5'- --aGC-CCGGCCGCcCCGAcgGGUGGGg -3' miRNA: 3'- acgCGcGGCUGGCGcGGCU--CUACCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 31557 | 0.66 | 0.617846 |
Target: 5'- gGCGcCGCgGugCGCGaacgugaucaCGGGG-GGGCg -3' miRNA: 3'- aCGC-GCGgCugGCGCg---------GCUCUaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 8249 | 0.66 | 0.617846 |
Target: 5'- gGcCGgGCCGG-CGCGCCGGGAcgccccuccgGGGg -3' miRNA: 3'- aC-GCgCGGCUgGCGCGGCUCUa---------CCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 96863 | 0.66 | 0.617846 |
Target: 5'- cGCGCccGCCGGgCGCGgCGcgcgcggGGGCa -3' miRNA: 3'- aCGCG--CGGCUgGCGCgGCucua---CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 97650 | 0.66 | 0.617846 |
Target: 5'- gUGCGCGCCGccuCCugguCGCCGc---GGGCc -3' miRNA: 3'- -ACGCGCGGCu--GGc---GCGGCucuaCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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