miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 15087 0.66 0.598334
Target:  5'- gGCGCcCCGACaCGCGgCGccucgGGGCc -3'
miRNA:   3'- aCGCGcGGCUG-GCGCgGCucua-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 15174 0.72 0.289071
Target:  5'- cGCGCGCCcugcGCCGCGCCcucuuuGAcuuuuacgccaUGGGCu -3'
miRNA:   3'- aCGCGCGGc---UGGCGCGGcu----CU-----------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 15900 0.68 0.464951
Target:  5'- cGCGCGCCccgacgcggcccGCCGcCGCCccguGAGgcGGGCc -3'
miRNA:   3'- aCGCGCGGc-----------UGGC-GCGG----CUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 17096 0.67 0.521657
Target:  5'- cGCGCGcCCGuCgggGCGCCGGGGgcuccgGcGGCg -3'
miRNA:   3'- aCGCGC-GGCuGg--CGCGGCUCUa-----C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 17716 0.67 0.512316
Target:  5'- gUGUGCGcCCGGgUGCGCCG----GGGCc -3'
miRNA:   3'- -ACGCGC-GGCUgGCGCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 18406 0.66 0.588609
Target:  5'- aGC-CGCUGuCCcCGCCGGGGgaggaGGGCc -3'
miRNA:   3'- aCGcGCGGCuGGcGCGGCUCUa----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 18694 0.66 0.588609
Target:  5'- gGCGCGCgGGCgGCGCCGGcgucGUGacGCc -3'
miRNA:   3'- aCGCGCGgCUGgCGCGGCUc---UACc-CG- -5'
29377 3' -62.8 NC_006151.1 + 18737 0.69 0.414949
Target:  5'- cGCGuCGUCG-CCGcCGCCGGGGccccacgGGGUg -3'
miRNA:   3'- aCGC-GCGGCuGGC-GCGGCUCUa------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 19020 0.73 0.258239
Target:  5'- cGCGCGCCGgcgaggugaaGCUGCacGCCGGGuccaccGGGCg -3'
miRNA:   3'- aCGCGCGGC----------UGGCG--CGGCUCua----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 19240 0.7 0.390413
Target:  5'- cUGCGaguggaaGCCGAgCGCGUgGAaGcgGGGCu -3'
miRNA:   3'- -ACGCg------CGGCUgGCGCGgCU-CuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 19367 0.66 0.608082
Target:  5'- aGCGUGUagaGGcCCGUGUCGu--UGGGCg -3'
miRNA:   3'- aCGCGCGg--CU-GGCGCGGCucuACCCG- -5'
29377 3' -62.8 NC_006151.1 + 19413 0.69 0.431822
Target:  5'- gGUGCGgCGAccaCCGCuCCGGGGugacgaUGGGCg -3'
miRNA:   3'- aCGCGCgGCU---GGCGcGGCUCU------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 19633 0.67 0.550056
Target:  5'- --gGCGCCGucGCCGCGCgCGucGA-GGGUg -3'
miRNA:   3'- acgCGCGGC--UGGCGCG-GCu-CUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 20112 0.68 0.503044
Target:  5'- cGgGCGCCccggcGACgGgGCUGGGGggcGGGCg -3'
miRNA:   3'- aCgCGCGG-----CUGgCgCGGCUCUa--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 20156 0.68 0.475686
Target:  5'- gGCGCGUgGACCGCcggGCCGcGcccGGGUc -3'
miRNA:   3'- aCGCGCGgCUGGCG---CGGCuCua-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 20754 0.71 0.308921
Target:  5'- gGCGCGCCuccaccgcggcgGACgCGCGCCGGGcgaGcGGCu -3'
miRNA:   3'- aCGCGCGG------------CUG-GCGCGGCUCua-C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 20980 0.71 0.315764
Target:  5'- gGCGCGUCG-CCGgGCaCGAGGacGGCg -3'
miRNA:   3'- aCGCGCGGCuGGCgCG-GCUCUacCCG- -5'
29377 3' -62.8 NC_006151.1 + 21276 0.7 0.374592
Target:  5'- aGCGCGCCcaucgcgguGcCCGUGCCGAcgaucaccgagcGGUGGcGCg -3'
miRNA:   3'- aCGCGCGG---------CuGGCGCGGCU------------CUACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 21474 0.72 0.288427
Target:  5'- cGCGuCGCCGGCUcgggcagGCgGCCGGGGggcgcGGGCg -3'
miRNA:   3'- aCGC-GCGGCUGG-------CG-CGGCUCUa----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 21521 0.67 0.566361
Target:  5'- gGCGgGCUcgggcuucggccggGGCCgGgGCCGGGGccUGGGCc -3'
miRNA:   3'- aCGCgCGG--------------CUGG-CgCGGCUCU--ACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.