miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 5729 0.69 0.449089
Target:  5'- gGUgGCGCCGggguccgagGCCGCGCCGccGGcccGGGCu -3'
miRNA:   3'- aCG-CGCGGC---------UGGCGCGGC--UCua-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 6400 0.72 0.276403
Target:  5'- cGgGCGCCGA--GCGCgGAGAgcGGGCg -3'
miRNA:   3'- aCgCGCGGCUggCGCGgCUCUa-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 7656 0.66 0.578913
Target:  5'- -uCGCGCuCGGCgCGCGCUccGA-GGGCg -3'
miRNA:   3'- acGCGCG-GCUG-GCGCGGcuCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 8126 0.66 0.608082
Target:  5'- --aGCGCgGACCcCGCCcgguGGggGGGCg -3'
miRNA:   3'- acgCGCGgCUGGcGCGGc---UCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 8249 0.66 0.617846
Target:  5'- gGcCGgGCCGG-CGCGCCGGGAcgccccuccgGGGg -3'
miRNA:   3'- aC-GCgCGGCUgGCGCGGCUCUa---------CCCg -5'
29377 3' -62.8 NC_006151.1 + 8300 0.7 0.35921
Target:  5'- cGgGCGCCGcgucCCGCcCCGAGcccccgGGGCg -3'
miRNA:   3'- aCgCGCGGCu---GGCGcGGCUCua----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 9489 0.66 0.598334
Target:  5'- cGCG-GCCG-CgGCGUgggaGAGcgGGGCg -3'
miRNA:   3'- aCGCgCGGCuGgCGCGg---CUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 9691 0.66 0.617846
Target:  5'- -cCGC-CCGGCCGCGggugcCCGGGAgacgGGaGCg -3'
miRNA:   3'- acGCGcGGCUGGCGC-----GGCUCUa---CC-CG- -5'
29377 3' -62.8 NC_006151.1 + 10904 0.77 0.136978
Target:  5'- gUGCcgGCGCgGACCggggucgggcccacgGCGCCGAgGGUGGGCg -3'
miRNA:   3'- -ACG--CGCGgCUGG---------------CGCGGCU-CUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 11032 0.69 0.406665
Target:  5'- cGcCGgGCCGGCCG-GCCGGGGgcccGGCc -3'
miRNA:   3'- aC-GCgCGGCUGGCgCGGCUCUac--CCG- -5'
29377 3' -62.8 NC_006151.1 + 11076 0.71 0.329793
Target:  5'- cUGUGCgGCgGACCGUGCCaAGuuuaGGGCg -3'
miRNA:   3'- -ACGCG-CGgCUGGCGCGGcUCua--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 11212 0.68 0.475686
Target:  5'- gGCGCGuCCGGgaaggcuucucCCGgGCCGcGA-GGGCc -3'
miRNA:   3'- aCGCGC-GGCU-----------GGCgCGGCuCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 11683 0.67 0.521657
Target:  5'- cUGCGC-CCGACgGgGCCGcgGGAcGGcGCg -3'
miRNA:   3'- -ACGCGcGGCUGgCgCGGC--UCUaCC-CG- -5'
29377 3' -62.8 NC_006151.1 + 11791 0.67 0.569252
Target:  5'- gGCGCGUgGGCgagaGgGgCGGGGUGGGg -3'
miRNA:   3'- aCGCGCGgCUGg---CgCgGCUCUACCCg -5'
29377 3' -62.8 NC_006151.1 + 13473 0.69 0.423335
Target:  5'- cGCGgGCCgGACCGCcccGCCGAcucGGGUc -3'
miRNA:   3'- aCGCgCGG-CUGGCG---CGGCUcuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 13681 0.71 0.329793
Target:  5'- gGaCGCGCCGGCCaauGCGggcucCCGGGAcgcGGGCa -3'
miRNA:   3'- aC-GCGCGGCUGG---CGC-----GGCUCUa--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 13754 0.67 0.569252
Target:  5'- cGCGgGCCgGACCGCccccuucCCGGGAcuuGGCa -3'
miRNA:   3'- aCGCgCGG-CUGGCGc------GGCUCUac-CCG- -5'
29377 3' -62.8 NC_006151.1 + 13950 0.66 0.588609
Target:  5'- gGCGCcCCGGggaCGCGCCGGccAUGGGg -3'
miRNA:   3'- aCGCGcGGCUg--GCGCGGCUc-UACCCg -5'
29377 3' -62.8 NC_006151.1 + 14824 0.67 0.549101
Target:  5'- -cCGCGUCcGCCGCGCCcauGGAccgggucUGGGCc -3'
miRNA:   3'- acGCGCGGcUGGCGCGGc--UCU-------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 15038 0.66 0.578913
Target:  5'- gUGCGCGUCcACgGCGCgCGGGGccccGGCg -3'
miRNA:   3'- -ACGCGCGGcUGgCGCG-GCUCUac--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.