miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 136815 0.68 0.466732
Target:  5'- cGCG-GCCGA-CGCGCCGcgc-GGGCu -3'
miRNA:   3'- aCGCgCGGCUgGCGCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 136755 0.67 0.531064
Target:  5'- cGCGCGCC--UCGCcCCGGccAUGGGCg -3'
miRNA:   3'- aCGCGCGGcuGGCGcGGCUc-UACCCG- -5'
29377 3' -62.8 NC_006151.1 + 136466 1.11 0.000507
Target:  5'- gUGCGCGCCGACCGCGCCGAGAUGGGCg -3'
miRNA:   3'- -ACGCGCGGCUGGCGCGGCUCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 135501 0.67 0.527294
Target:  5'- cGCGCggccucgGCCGAggccaucacguccuCgGCGgCGAGcgGGGCg -3'
miRNA:   3'- aCGCG-------CGGCU--------------GgCGCgGCUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 135366 0.69 0.414949
Target:  5'- cGCGCGuuGGCCGCgugcGCCGcGAccacGGCg -3'
miRNA:   3'- aCGCGCggCUGGCG----CGGCuCUac--CCG- -5'
29377 3' -62.8 NC_006151.1 + 135298 0.68 0.484725
Target:  5'- -cCGCGUCGACgGCGCCGAccGAgaGGUa -3'
miRNA:   3'- acGCGCGGCUGgCGCGGCU--CUacCCG- -5'
29377 3' -62.8 NC_006151.1 + 135178 0.72 0.270238
Target:  5'- cGgGCGCCGGCUGcCGCCGcc--GGGCc -3'
miRNA:   3'- aCgCGCGGCUGGC-GCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 135119 0.73 0.264183
Target:  5'- aGCGCGCgGGgCGgGCUGGGcgGGGa -3'
miRNA:   3'- aCGCGCGgCUgGCgCGGCUCuaCCCg -5'
29377 3' -62.8 NC_006151.1 + 134312 0.66 0.62762
Target:  5'- uUGCaCGCCG-CUGCGCCucgcGccGGGCa -3'
miRNA:   3'- -ACGcGCGGCuGGCGCGGcu--CuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 134249 0.66 0.62762
Target:  5'- cGCGgGCUu-UCGCGgCGAGGUGcaGGCg -3'
miRNA:   3'- aCGCgCGGcuGGCGCgGCUCUAC--CCG- -5'
29377 3' -62.8 NC_006151.1 + 134028 0.66 0.578913
Target:  5'- aGCGCGgCGACgaGCGUcagCGAGAgcccGGCg -3'
miRNA:   3'- aCGCGCgGCUGg-CGCG---GCUCUac--CCG- -5'
29377 3' -62.8 NC_006151.1 + 133389 0.7 0.35921
Target:  5'- gGgGCGgCGGCCgGgGCCGAGc-GGGCg -3'
miRNA:   3'- aCgCGCgGCUGG-CgCGGCUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 133331 0.69 0.423335
Target:  5'- gGCGCGCCGGgcggccgguuCCGCGgCGGcGGUGGuGg -3'
miRNA:   3'- aCGCGCGGCU----------GGCGCgGCU-CUACC-Cg -5'
29377 3' -62.8 NC_006151.1 + 133225 0.71 0.322722
Target:  5'- cGUGCGUCGcGCCGCGCCa----GGGCa -3'
miRNA:   3'- aCGCGCGGC-UGGCGCGGcucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 132630 0.71 0.351687
Target:  5'- cGCGUccGCCGuCgGCGCCcGGAccUGGGCc -3'
miRNA:   3'- aCGCG--CGGCuGgCGCGGcUCU--ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 132114 0.69 0.437822
Target:  5'- gGCGCGCaCGAgcggcaggcccagcUCGCGCCGGcGGUGGu- -3'
miRNA:   3'- aCGCGCG-GCU--------------GGCGCGGCU-CUACCcg -5'
29377 3' -62.8 NC_006151.1 + 131864 0.85 0.039883
Target:  5'- cGCGCGCCGGCgGCGUCGGGucgcaGGGCa -3'
miRNA:   3'- aCGCGCGGCUGgCGCGGCUCua---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 131803 0.66 0.63153
Target:  5'- aGCGCGCCauccuccucggccucGGCUaGCGUCaccguggugauGAGcgGGGCg -3'
miRNA:   3'- aCGCGCGG---------------CUGG-CGCGG-----------CUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 130853 0.68 0.466732
Target:  5'- cGC-CGUCGGCgGCGCgggCGGGAccgcagUGGGCg -3'
miRNA:   3'- aCGcGCGGCUGgCGCG---GCUCU------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 130559 0.7 0.397674
Target:  5'- gGCGCGCUG-CCGCcCCacgagugcaucugGAGGUGGuGCa -3'
miRNA:   3'- aCGCGCGGCuGGCGcGG-------------CUCUACC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.