miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 143035 0.7 0.374592
Target:  5'- cUGUGUGCCaaggaugaaGACCGCGaCGAuGGUGGGg -3'
miRNA:   3'- -ACGCGCGG---------CUGGCGCgGCU-CUACCCg -5'
29377 3' -62.8 NC_006151.1 + 142947 0.68 0.497515
Target:  5'- cGCGCGCCcGCCcucgcccaucGCcauccacaaccuccuGCCGcGGGUGGGCc -3'
miRNA:   3'- aCGCGCGGcUGG----------CG---------------CGGC-UCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 142139 0.69 0.440408
Target:  5'- gGCGC-CCGAugcCUGCGCCGGcgcaggGGGCu -3'
miRNA:   3'- aCGCGcGGCU---GGCGCGGCUcua---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 141861 0.67 0.550056
Target:  5'- -uCGCGCCGcGCCcucugGUGCCGgAGGgccGGGCa -3'
miRNA:   3'- acGCGCGGC-UGG-----CGCGGC-UCUa--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 141797 0.69 0.406665
Target:  5'- cGCGgGUCGGucCCGCcCCGAGGgcacGGGCc -3'
miRNA:   3'- aCGCgCGGCU--GGCGcGGCUCUa---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 141597 0.71 0.308242
Target:  5'- gGCGagaGCCGcCCGgcgaggcUGCCGGGAUcGGGCg -3'
miRNA:   3'- aCGCg--CGGCuGGC-------GCGGCUCUA-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 141477 0.67 0.512316
Target:  5'- gGgGCGCCGAguccgagagccuCCGCGgCGAc--GGGCg -3'
miRNA:   3'- aCgCGCGGCU------------GGCGCgGCUcuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 139918 0.66 0.617846
Target:  5'- cGCGcCGCgGGCuCGuCGCCG---UGGGCc -3'
miRNA:   3'- aCGC-GCGgCUG-GC-GCGGCucuACCCG- -5'
29377 3' -62.8 NC_006151.1 + 139808 0.66 0.608082
Target:  5'- cGCGCGCCGccgucuCCGCGacgcaCGcgcGGGUcGGCg -3'
miRNA:   3'- aCGCGCGGCu-----GGCGCg----GC---UCUAcCCG- -5'
29377 3' -62.8 NC_006151.1 + 139311 0.67 0.569252
Target:  5'- cGCGUGCugcuCGACCGUgcucGCCGGGAUcuuugccaaGGCg -3'
miRNA:   3'- aCGCGCG----GCUGGCG----CGGCUCUAc--------CCG- -5'
29377 3' -62.8 NC_006151.1 + 138741 0.75 0.195193
Target:  5'- cGCGCGCCGcgacuGCCGCGCCuaccuGUGGGa -3'
miRNA:   3'- aCGCGCGGC-----UGGCGCGGcuc--UACCCg -5'
29377 3' -62.8 NC_006151.1 + 138628 0.66 0.608082
Target:  5'- cGC-CGCCGGgggCGCGCCGGacUGGGa -3'
miRNA:   3'- aCGcGCGGCUg--GCGCGGCUcuACCCg -5'
29377 3' -62.8 NC_006151.1 + 138248 0.71 0.336978
Target:  5'- cGCGgGCgCGACCGCGCagcGGGUGguGGCc -3'
miRNA:   3'- aCGCgCG-GCUGGCGCGgc-UCUAC--CCG- -5'
29377 3' -62.8 NC_006151.1 + 137672 0.81 0.070251
Target:  5'- aGCGCccGCCGugcggcuGCCGCGCCaAGAUGGGCu -3'
miRNA:   3'- aCGCG--CGGC-------UGGCGCGGcUCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 137513 0.71 0.344276
Target:  5'- uUG-GCGCCGcGCCGgGCgaCGAGGacUGGGCg -3'
miRNA:   3'- -ACgCGCGGC-UGGCgCG--GCUCU--ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 137398 0.67 0.521657
Target:  5'- --aGCGCCuGCC-CGCCGGG--GGGCg -3'
miRNA:   3'- acgCGCGGcUGGcGCGGCUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 137148 0.71 0.308921
Target:  5'- cGCgGCGCCGgagaugGCCGCGCaCGAGccgGcGGCg -3'
miRNA:   3'- aCG-CGCGGC------UGGCGCG-GCUCua-C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 137055 0.69 0.431822
Target:  5'- --gGCGCCGguguACCGCGUgGAGcUGGcGCa -3'
miRNA:   3'- acgCGCGGC----UGGCGCGgCUCuACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 136960 0.76 0.15868
Target:  5'- cUGCGCcgccugcuggagcugGCCG-CCGCGCCGGGcggcGGGCg -3'
miRNA:   3'- -ACGCG---------------CGGCuGGCGCGGCUCua--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 136860 0.7 0.390413
Target:  5'- cGCGCGCCgcguGACCGcCGUCGAGGaGcGCc -3'
miRNA:   3'- aCGCGCGG----CUGGC-GCGGCUCUaCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.