miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 10904 0.77 0.136978
Target:  5'- gUGCcgGCGCgGACCggggucgggcccacgGCGCCGAgGGUGGGCg -3'
miRNA:   3'- -ACG--CGCGgCUGG---------------CGCGGCU-CUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 99595 0.77 0.142483
Target:  5'- gGCG-GCCGagcGCCGCGCCGGGcUGGcGCa -3'
miRNA:   3'- aCGCgCGGC---UGGCGCGGCUCuACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 90961 0.77 0.146026
Target:  5'- cGuCGCGCCGACCGCGUCGAcgcccUGGcGCc -3'
miRNA:   3'- aC-GCGCGGCUGGCGCGGCUcu---ACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 34610 0.77 0.146026
Target:  5'- cGCGCGCCGAgCGCGaggCGcGGGUGGGg -3'
miRNA:   3'- aCGCGCGGCUgGCGCg--GC-UCUACCCg -5'
29377 3' -62.8 NC_006151.1 + 113222 0.76 0.152979
Target:  5'- --aGCGCCGgcACCGCGCCGuGGAcgaguacUGGGCg -3'
miRNA:   3'- acgCGCGGC--UGGCGCGGC-UCU-------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 58240 0.76 0.153354
Target:  5'- cGCGCGCCGcCaCGCGCCGGcccgcGGGCc -3'
miRNA:   3'- aCGCGCGGCuG-GCGCGGCUcua--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 103146 0.76 0.157141
Target:  5'- aGCGCGCCucGGCCGaCGCCGAccUGGcGCg -3'
miRNA:   3'- aCGCGCGG--CUGGC-GCGGCUcuACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 136960 0.76 0.15868
Target:  5'- cUGCGCcgccugcuggagcugGCCG-CCGCGCCGGGcggcGGGCg -3'
miRNA:   3'- -ACGCG---------------CGGCuGGCGCGGCUCua--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 39011 0.76 0.164971
Target:  5'- gGCGCcccgcuccGCCG-CCGCGCCGccuGGAUGcGGCa -3'
miRNA:   3'- aCGCG--------CGGCuGGCGCGGC---UCUAC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 27223 0.76 0.168607
Target:  5'- cGCGCGCCGuggaCGCGCaccuccuCGGGGUcGGGCg -3'
miRNA:   3'- aCGCGCGGCug--GCGCG-------GCUCUA-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 119195 0.75 0.173149
Target:  5'- gGCGcCGCCGACgCGCGCaaGGA-GGGCg -3'
miRNA:   3'- aCGC-GCGGCUG-GCGCGgcUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 102238 0.75 0.173149
Target:  5'- cGUGCGCCGucGCCGCGCucuuCGAGcccauccUGGGCg -3'
miRNA:   3'- aCGCGCGGC--UGGCGCG----GCUCu------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 72068 0.75 0.177373
Target:  5'- cGCGCGCCaccacCCGCGCCGucagcucgcGGGccUGGGCg -3'
miRNA:   3'- aCGCGCGGcu---GGCGCGGC---------UCU--ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 66895 0.75 0.181688
Target:  5'- -cCGCGCCGGaggaCGcCGCCGAGGaGGGCc -3'
miRNA:   3'- acGCGCGGCUg---GC-GCGGCUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 96610 0.75 0.186095
Target:  5'- gGCGCGCCGACguCGUGCCc-GA-GGGCg -3'
miRNA:   3'- aCGCGCGGCUG--GCGCGGcuCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 104410 0.75 0.186095
Target:  5'- gGCGUGCUGGcCCGCGCCGccgccGGcaugGGGCg -3'
miRNA:   3'- aCGCGCGGCU-GGCGCGGC-----UCua--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 33308 0.75 0.186095
Target:  5'- cGCGCGCguggGACCGgGaCCGGGAcaggGGGCg -3'
miRNA:   3'- aCGCGCGg---CUGGCgC-GGCUCUa---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 129355 0.75 0.186095
Target:  5'- gGCGCGCCGAUaaaUGCGCuCGGGGUuccGGCa -3'
miRNA:   3'- aCGCGCGGCUG---GCGCG-GCUCUAc--CCG- -5'
29377 3' -62.8 NC_006151.1 + 106503 0.75 0.190596
Target:  5'- aGCG-GCUGGCgCGCGCCGuGccGGGCg -3'
miRNA:   3'- aCGCgCGGCUG-GCGCGGCuCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 103890 0.75 0.190596
Target:  5'- gGCGCGCC-ACCugGCGCUGgAGGUGGcGCg -3'
miRNA:   3'- aCGCGCGGcUGG--CGCGGC-UCUACC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.