miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 106072 0.75 0.195193
Target:  5'- cGUGCGCCaccGCCGCGCCGAc-UGGGa -3'
miRNA:   3'- aCGCGCGGc--UGGCGCGGCUcuACCCg -5'
29377 3' -62.8 NC_006151.1 + 60088 0.75 0.195193
Target:  5'- cGCGCGCCG-CCGCgaacGCCGGGcgGcagcGGCg -3'
miRNA:   3'- aCGCGCGGCuGGCG----CGGCUCuaC----CCG- -5'
29377 3' -62.8 NC_006151.1 + 138741 0.75 0.195193
Target:  5'- cGCGCGCCGcgacuGCCGCGCCuaccuGUGGGa -3'
miRNA:   3'- aCGCGCGGC-----UGGCGCGGcuc--UACCCg -5'
29377 3' -62.8 NC_006151.1 + 119593 0.75 0.199887
Target:  5'- gGCGCGCCGACgGaGCCcc-AUGGGCg -3'
miRNA:   3'- aCGCGCGGCUGgCgCGGcucUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 52400 0.74 0.20323
Target:  5'- cGgGCGCCG-CCGCGcCCGAGAagucaaagugcuccUcGGGCa -3'
miRNA:   3'- aCgCGCGGCuGGCGC-GGCUCU--------------A-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 39899 0.74 0.204678
Target:  5'- uUGCGCGCCuuCUGCGCCGc---GGGCu -3'
miRNA:   3'- -ACGCGCGGcuGGCGCGGCucuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 56614 0.74 0.209075
Target:  5'- gGCGCGCUcACCGCGCCccugcgcacgcccGAGAUGGcCg -3'
miRNA:   3'- aCGCGCGGcUGGCGCGG-------------CUCUACCcG- -5'
29377 3' -62.8 NC_006151.1 + 35971 0.74 0.209568
Target:  5'- gGCG-GCCGccGCCGCgGCCGAGGaagaGGGCa -3'
miRNA:   3'- aCGCgCGGC--UGGCG-CGGCUCUa---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 31692 0.74 0.209568
Target:  5'- cGCcgaGCCGGCCGCGCCau--UGGGCg -3'
miRNA:   3'- aCGcg-CGGCUGGCGCGGcucuACCCG- -5'
29377 3' -62.8 NC_006151.1 + 77523 0.74 0.214559
Target:  5'- gGCGCGCCucGGCCGCGC----GUGGGCc -3'
miRNA:   3'- aCGCGCGG--CUGGCGCGgcucUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 2915 0.74 0.214559
Target:  5'- aGCcgGCGCCGcGCCGCGCCGAGccGcGaGCa -3'
miRNA:   3'- aCG--CGCGGC-UGGCGCGGCUCuaC-C-CG- -5'
29377 3' -62.8 NC_006151.1 + 106688 0.74 0.218113
Target:  5'- gGCGCGCCGG--GCGCCGGcGAccuguacgcgcccgUGGGCa -3'
miRNA:   3'- aCGCGCGGCUggCGCGGCU-CU--------------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 82617 0.74 0.219652
Target:  5'- cGCGCGCgG---GCGCCGcGGUGGGCg -3'
miRNA:   3'- aCGCGCGgCuggCGCGGCuCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 54616 0.74 0.219652
Target:  5'- gGUGCGCCGGgCGCGCCccgggGGGAaGcGGCg -3'
miRNA:   3'- aCGCGCGGCUgGCGCGG-----CUCUaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 123012 0.74 0.219652
Target:  5'- cGCGCccccGCCGGCgGaCGCCGuGGcgUGGGCg -3'
miRNA:   3'- aCGCG----CGGCUGgC-GCGGCuCU--ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 73142 0.74 0.224847
Target:  5'- cGCGCGCCGAaaGUaggccaggucGaCCGAGAcGGGCg -3'
miRNA:   3'- aCGCGCGGCUggCG----------C-GGCUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 5626 0.74 0.224847
Target:  5'- gGCGcCGCCGccGCCggGCGCCGAGAccGGCc -3'
miRNA:   3'- aCGC-GCGGC--UGG--CGCGGCUCUacCCG- -5'
29377 3' -62.8 NC_006151.1 + 49604 0.74 0.228546
Target:  5'- aGCGCGCUGccgguccuggcgguGCUGCGCgagugGGGGUGGGCc -3'
miRNA:   3'- aCGCGCGGC--------------UGGCGCGg----CUCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 47760 0.74 0.230147
Target:  5'- uUGCGCGaugcggCGAUCGCGCCGAGcUGGa- -3'
miRNA:   3'- -ACGCGCg-----GCUGGCGCGGCUCuACCcg -5'
29377 3' -62.8 NC_006151.1 + 49344 0.74 0.230147
Target:  5'- cUGCGCGCCGGacCCGCGCCGccacaaGGuGCu -3'
miRNA:   3'- -ACGCGCGGCU--GGCGCGGCucua--CC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.