miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 26372 0.66 0.880182
Target:  5'- gGGGCgcGCGUC-CCC-CGGCgGGcGGCGu -3'
miRNA:   3'- -CCUGa-UGUAGaGGGuGCUGgCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 117303 0.66 0.880182
Target:  5'- -aGCUGCucggcgCUCgCCACG-CCGaGGGCGg -3'
miRNA:   3'- ccUGAUGua----GAG-GGUGCuGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 78682 0.66 0.880182
Target:  5'- uGGACggg--CUCUacgcCGGCCGGGGCc -3'
miRNA:   3'- -CCUGauguaGAGGgu--GCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 132560 0.66 0.880182
Target:  5'- cGGGCaGCuccUCcUCCACGGCCGGGacucGCGg -3'
miRNA:   3'- -CCUGaUGu--AGaGGGUGCUGGCCC----CGU- -5'
29377 5' -57.2 NC_006151.1 + 28284 0.66 0.873087
Target:  5'- gGGACgcggGCccggCUCCCccauuggccggcGCGuccCCGGGGCGc -3'
miRNA:   3'- -CCUGa---UGua--GAGGG------------UGCu--GGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 68648 0.66 0.873087
Target:  5'- cGGCUcCA-CUgCCACGGCCggcGGGGCc -3'
miRNA:   3'- cCUGAuGUaGAgGGUGCUGG---CCCCGu -5'
29377 5' -57.2 NC_006151.1 + 80309 0.66 0.870917
Target:  5'- cGGACcACA-CaUCCGCaggaguuuugggggGACCGGGGCGa -3'
miRNA:   3'- -CCUGaUGUaGaGGGUG--------------CUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 77408 0.66 0.8613
Target:  5'- gGGGCUGCAUCgugUCCGUGcACCGGcgcucgcgggagaucGGCAa -3'
miRNA:   3'- -CCUGAUGUAGa--GGGUGC-UGGCC---------------CCGU- -5'
29377 5' -57.2 NC_006151.1 + 68821 0.66 0.858271
Target:  5'- cGAC--CAUCUCCCGCG-CCGGcgugugcucgaGGCGc -3'
miRNA:   3'- cCUGauGUAGAGGGUGCuGGCC-----------CCGU- -5'
29377 5' -57.2 NC_006151.1 + 113490 0.66 0.858271
Target:  5'- uGACUGCAUCgagCCCGUGcUCGaGGGCu -3'
miRNA:   3'- cCUGAUGUAGa--GGGUGCuGGC-CCCGu -5'
29377 5' -57.2 NC_006151.1 + 94773 0.66 0.858271
Target:  5'- -cGCaGCGUCUCCaugaGCGGCagguuGGGGCGc -3'
miRNA:   3'- ccUGaUGUAGAGGg---UGCUGg----CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 73199 0.66 0.857509
Target:  5'- cGACUGCug--CCCGCGGgccaggcCCGcGGGCAc -3'
miRNA:   3'- cCUGAUGuagaGGGUGCU-------GGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 5902 0.66 0.857509
Target:  5'- -cGCUGCGagugCUgCCggggucgGCGGCCGGGGCc -3'
miRNA:   3'- ccUGAUGUa---GAgGG-------UGCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 57521 0.66 0.850561
Target:  5'- cGGCgGCGgccgcCUCCggCGCGGCCGcGGGCAc -3'
miRNA:   3'- cCUGaUGUa----GAGG--GUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 55610 0.66 0.842657
Target:  5'- cGGACguggaGCGcCUCUCGCGGCUcuGGGaGCAg -3'
miRNA:   3'- -CCUGa----UGUaGAGGGUGCUGG--CCC-CGU- -5'
29377 5' -57.2 NC_006151.1 + 136883 0.66 0.842657
Target:  5'- aGGAgcGCcUCgcgcCCCACGGCUGGGuGCGc -3'
miRNA:   3'- -CCUgaUGuAGa---GGGUGCUGGCCC-CGU- -5'
29377 5' -57.2 NC_006151.1 + 78033 0.66 0.842657
Target:  5'- -cGCUACAUC-CCgGCGACgCGGcGCAu -3'
miRNA:   3'- ccUGAUGUAGaGGgUGCUG-GCCcCGU- -5'
29377 5' -57.2 NC_006151.1 + 4909 0.66 0.842657
Target:  5'- cGGGCcagggCUCCC-CGAgCGGGGUg -3'
miRNA:   3'- -CCUGauguaGAGGGuGCUgGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 45570 0.66 0.842657
Target:  5'- cGGGC--CAUCgUCCCgggACGGCCcgagGGGGCGg -3'
miRNA:   3'- -CCUGauGUAG-AGGG---UGCUGG----CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 81576 0.67 0.834567
Target:  5'- cGGAgCaGgGUCUCgCGCGcgucGCCGGGGCc -3'
miRNA:   3'- -CCU-GaUgUAGAGgGUGC----UGGCCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.