miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 637 0.75 0.398375
Target:  5'- cGGACgugACGccggCUUCCggggcGCGGCCGGGGCGg -3'
miRNA:   3'- -CCUGa--UGUa---GAGGG-----UGCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 2843 0.68 0.754606
Target:  5'- cGGACguagACgugguaGUCcCCCACGGCCGGGcCGu -3'
miRNA:   3'- -CCUGa---UG------UAGaGGGUGCUGGCCCcGU- -5'
29377 5' -57.2 NC_006151.1 + 4200 0.68 0.754606
Target:  5'- aGGCagGCGgg-CCCgaggGCGGCCGGGGCGc -3'
miRNA:   3'- cCUGa-UGUagaGGG----UGCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 4909 0.66 0.842657
Target:  5'- cGGGCcagggCUCCC-CGAgCGGGGUg -3'
miRNA:   3'- -CCUGauguaGAGGGuGCUgGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 5013 0.68 0.78252
Target:  5'- gGGGCcggGCGggCUCCgG-GGCCGGGGCc -3'
miRNA:   3'- -CCUGa--UGUa-GAGGgUgCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 5902 0.66 0.857509
Target:  5'- -cGCUGCGagugCUgCCggggucgGCGGCCGGGGCc -3'
miRNA:   3'- ccUGAUGUa---GAgGG-------UGCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 8300 0.7 0.645953
Target:  5'- cGGGCgccGCGUCccgCCC-CGAgcccCCGGGGCGc -3'
miRNA:   3'- -CCUGa--UGUAGa--GGGuGCU----GGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 9025 0.7 0.645953
Target:  5'- cGGACccc--CUCCCGCccGCCGGGGCGc -3'
miRNA:   3'- -CCUGauguaGAGGGUGc-UGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 10913 0.68 0.773335
Target:  5'- cGGACcgGgGUCgggCCCACGgcGCCGaGGGUg -3'
miRNA:   3'- -CCUGa-UgUAGa--GGGUGC--UGGC-CCCGu -5'
29377 5' -57.2 NC_006151.1 + 17382 0.68 0.791572
Target:  5'- cGGAC--CGUgUCCgCACGA-CGGGGCGc -3'
miRNA:   3'- -CCUGauGUAgAGG-GUGCUgGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 18733 0.68 0.745079
Target:  5'- aGAUcGCGUCgUCgCCGCcGCCGGGGCc -3'
miRNA:   3'- cCUGaUGUAG-AG-GGUGcUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 21367 0.67 0.834567
Target:  5'- cGGGCUGCGgccaCCCgcugggcacgACGGCCggcGGGGCGa -3'
miRNA:   3'- -CCUGAUGUaga-GGG----------UGCUGG---CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 21523 0.69 0.706094
Target:  5'- cGGGCUcggGCuUCggCCGgGGCCGGGGCc -3'
miRNA:   3'- -CCUGA---UGuAGagGGUgCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 22801 0.7 0.66613
Target:  5'- uGGGC--CGUCUCCC-CGGCCgucaggugcagGGGGCGc -3'
miRNA:   3'- -CCUGauGUAGAGGGuGCUGG-----------CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 24328 0.69 0.695177
Target:  5'- cGGAUgaggucgaucaggUGCAUCUCCCcguUGAUCGcGGGCu -3'
miRNA:   3'- -CCUG-------------AUGUAGAGGGu--GCUGGC-CCCGu -5'
29377 5' -57.2 NC_006151.1 + 25383 0.68 0.754606
Target:  5'- uGACggcgGCGgugguUCUCgaCCGCGACgGGGGCGc -3'
miRNA:   3'- cCUGa---UGU-----AGAG--GGUGCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 26372 0.66 0.880182
Target:  5'- gGGGCgcGCGUC-CCC-CGGCgGGcGGCGu -3'
miRNA:   3'- -CCUGa-UGUAGaGGGuGCUGgCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 27333 0.78 0.248204
Target:  5'- gGGGCUGC-UC-CCCGgGACCGGGGUc -3'
miRNA:   3'- -CCUGAUGuAGaGGGUgCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 28110 0.68 0.773335
Target:  5'- gGGGC-GCggCUCCUcguCGGCuCGGGGCGc -3'
miRNA:   3'- -CCUGaUGuaGAGGGu--GCUG-GCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 28240 0.71 0.615627
Target:  5'- cGGGCcgACGgg-CCCAuUGGCCGGGGCc -3'
miRNA:   3'- -CCUGa-UGUagaGGGU-GCUGGCCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.