miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 28284 0.66 0.873087
Target:  5'- gGGACgcggGCccggCUCCCccauuggccggcGCGuccCCGGGGCGc -3'
miRNA:   3'- -CCUGa---UGua--GAGGG------------UGCu--GGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 34574 0.69 0.706094
Target:  5'- -cGCU-CGUCUCuCCGacCGGCUGGGGCGc -3'
miRNA:   3'- ccUGAuGUAGAG-GGU--GCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 39832 0.72 0.565417
Target:  5'- cGuCUuCGUCUCCUGCGgccGCCGGGGCc -3'
miRNA:   3'- cCuGAuGUAGAGGGUGC---UGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 45570 0.66 0.842657
Target:  5'- cGGGC--CAUCgUCCCgggACGGCCcgagGGGGCGg -3'
miRNA:   3'- -CCUGauGUAG-AGGG---UGCUGG----CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 46921 0.68 0.773335
Target:  5'- aGGACgacgACugagCUCCCucuuccucgccGCgGACUGGGGCGa -3'
miRNA:   3'- -CCUGa---UGua--GAGGG-----------UG-CUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 48652 0.67 0.826297
Target:  5'- -cGCUGCAgcagcagCCCcCG-CCGGGGCAg -3'
miRNA:   3'- ccUGAUGUaga----GGGuGCuGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 50361 0.69 0.696173
Target:  5'- -cGCcGCGUCUCCgC-CGGCgGGGGCGa -3'
miRNA:   3'- ccUGaUGUAGAGG-GuGCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 55610 0.66 0.842657
Target:  5'- cGGACguggaGCGcCUCUCGCGGCUcuGGGaGCAg -3'
miRNA:   3'- -CCUGa----UGUaGAGGGUGCUGG--CCC-CGU- -5'
29377 5' -57.2 NC_006151.1 + 57521 0.66 0.850561
Target:  5'- cGGCgGCGgccgcCUCCggCGCGGCCGcGGGCAc -3'
miRNA:   3'- cCUGaUGUa----GAGG--GUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 61346 0.67 0.826297
Target:  5'- cGGCUGCGca--CCACGGCCGGGaggucGCAa -3'
miRNA:   3'- cCUGAUGUagagGGUGCUGGCCC-----CGU- -5'
29377 5' -57.2 NC_006151.1 + 62451 0.74 0.406834
Target:  5'- cGcCUGCAUCgcccaCCGCGcCCGGGGCAg -3'
miRNA:   3'- cCuGAUGUAGag---GGUGCuGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 62524 0.72 0.565417
Target:  5'- cGGuacCUGCAgaagCgCCugCACGGCCGGGGCAa -3'
miRNA:   3'- -CCu--GAUGUa---GaGG--GUGCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 68648 0.66 0.873087
Target:  5'- cGGCUcCA-CUgCCACGGCCggcGGGGCc -3'
miRNA:   3'- cCUGAuGUaGAgGGUGCUGG---CCCCGu -5'
29377 5' -57.2 NC_006151.1 + 68821 0.66 0.858271
Target:  5'- cGAC--CAUCUCCCGCG-CCGGcgugugcucgaGGCGc -3'
miRNA:   3'- cCUGauGUAGAGGGUGCuGGCC-----------CCGU- -5'
29377 5' -57.2 NC_006151.1 + 69330 0.68 0.745079
Target:  5'- cGGGC-GCGUCgccgCCCGCGAgCGcGGCGu -3'
miRNA:   3'- -CCUGaUGUAGa---GGGUGCUgGCcCCGU- -5'
29377 5' -57.2 NC_006151.1 + 73199 0.66 0.857509
Target:  5'- cGACUGCug--CCCGCGGgccaggcCCGcGGGCAc -3'
miRNA:   3'- cCUGAUGuagaGGGUGCU-------GGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 77408 0.66 0.8613
Target:  5'- gGGGCUGCAUCgugUCCGUGcACCGGcgcucgcgggagaucGGCAa -3'
miRNA:   3'- -CCUGAUGUAGa--GGGUGC-UGGCC---------------CCGU- -5'
29377 5' -57.2 NC_006151.1 + 78033 0.66 0.842657
Target:  5'- -cGCUACAUC-CCgGCGACgCGGcGCAu -3'
miRNA:   3'- ccUGAUGUAGaGGgUGCUG-GCCcCGU- -5'
29377 5' -57.2 NC_006151.1 + 78682 0.66 0.880182
Target:  5'- uGGACggg--CUCUacgcCGGCCGGGGCc -3'
miRNA:   3'- -CCUGauguaGAGGgu--GCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 80309 0.66 0.870917
Target:  5'- cGGACcACA-CaUCCGCaggaguuuugggggGACCGGGGCGa -3'
miRNA:   3'- -CCUGaUGUaGaGGGUG--------------CUGGCCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.