Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 5' | -57.2 | NC_006151.1 | + | 81576 | 0.67 | 0.834567 |
Target: 5'- cGGAgCaGgGUCUCgCGCGcgucGCCGGGGCc -3' miRNA: 3'- -CCU-GaUgUAGAGgGUGC----UGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 81691 | 0.67 | 0.809248 |
Target: 5'- cGGCgACgGUCgCCCGCGcgagguccaGCCGGGGCGc -3' miRNA: 3'- cCUGaUG-UAGaGGGUGC---------UGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 81987 | 0.68 | 0.78252 |
Target: 5'- cGGGCUGCAcca-CgGCGGCCaGGGCGg -3' miRNA: 3'- -CCUGAUGUagagGgUGCUGGcCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 88128 | 0.69 | 0.706094 |
Target: 5'- cGGGCggGCG-CUCCgCACGuugagcagGCCGGGGUg -3' miRNA: 3'- -CCUGa-UGUaGAGG-GUGC--------UGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 88854 | 0.68 | 0.745079 |
Target: 5'- aGGA--GCcgCUCCCGCGGgagcuCCGGGcGCGg -3' miRNA: 3'- -CCUgaUGuaGAGGGUGCU-----GGCCC-CGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 90676 | 0.76 | 0.342419 |
Target: 5'- cGGGCcGCuuGUCcCCCGCGGCgGGGGCGg -3' miRNA: 3'- -CCUGaUG--UAGaGGGUGCUGgCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 91924 | 0.67 | 0.817855 |
Target: 5'- cGGAggcCAUCUCCaCGCcGCCGGGGg- -3' miRNA: 3'- -CCUgauGUAGAGG-GUGcUGGCCCCgu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 94773 | 0.66 | 0.858271 |
Target: 5'- -cGCaGCGUCUCCaugaGCGGCagguuGGGGCGc -3' miRNA: 3'- ccUGaUGUAGAGGg---UGCUGg----CCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 100205 | 0.68 | 0.78252 |
Target: 5'- uGGACU-CGaUggCCACGGCCGcGGGCGc -3' miRNA: 3'- -CCUGAuGUaGagGGUGCUGGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 101493 | 0.68 | 0.754606 |
Target: 5'- cGugUACGUCUucgacCCgCACGGCCacGGGCAg -3' miRNA: 3'- cCugAUGUAGA-----GG-GUGCUGGc-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 101582 | 0.67 | 0.834567 |
Target: 5'- cGGGCUACGccgccagcgagCUCCggugGGCCGGGGCc -3' miRNA: 3'- -CCUGAUGUa----------GAGGgug-CUGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 113490 | 0.66 | 0.858271 |
Target: 5'- uGACUGCAUCgagCCCGUGcUCGaGGGCu -3' miRNA: 3'- cCUGAUGUAGa--GGGUGCuGGC-CCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 117303 | 0.66 | 0.880182 |
Target: 5'- -aGCUGCucggcgCUCgCCACG-CCGaGGGCGg -3' miRNA: 3'- ccUGAUGua----GAG-GGUGCuGGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 117805 | 0.67 | 0.800485 |
Target: 5'- cGGCgggGCGgggC-CCCACGcuuuaagacccgGCCGGGGCGg -3' miRNA: 3'- cCUGa--UGUa--GaGGGUGC------------UGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 122963 | 0.67 | 0.817855 |
Target: 5'- gGGGC-GCGgacgCCgGCGACgGGGGCGu -3' miRNA: 3'- -CCUGaUGUaga-GGgUGCUGgCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 125004 | 0.69 | 0.735455 |
Target: 5'- cGACUGCGUCcUCCGCGAggccUCGGaGGCc -3' miRNA: 3'- cCUGAUGUAGaGGGUGCU----GGCC-CCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 128025 | 0.68 | 0.791572 |
Target: 5'- cGACgGCGUCUgcgacgCCCGCGGCagCGGcGGCAg -3' miRNA: 3'- cCUGaUGUAGA------GGGUGCUG--GCC-CCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 131750 | 0.67 | 0.826297 |
Target: 5'- cGGGCgagGCgaccgucgcgGUCgcgaCCGCGGCCGcGGGCGc -3' miRNA: 3'- -CCUGa--UG----------UAGag--GGUGCUGGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 132560 | 0.66 | 0.880182 |
Target: 5'- cGGGCaGCuccUCcUCCACGGCCGGGacucGCGg -3' miRNA: 3'- -CCUGaUGu--AGaGGGUGCUGGCCC----CGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 133616 | 0.69 | 0.725744 |
Target: 5'- gGGGCgucuggGgGUCg-CgGCGGCCGGGGCGg -3' miRNA: 3'- -CCUGa-----UgUAGagGgUGCUGGCCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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