miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 128025 0.68 0.791572
Target:  5'- cGACgGCGUCUgcgacgCCCGCGGCagCGGcGGCAg -3'
miRNA:   3'- cCUGaUGUAGA------GGGUGCUG--GCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 100205 0.68 0.78252
Target:  5'- uGGACU-CGaUggCCACGGCCGcGGGCGc -3'
miRNA:   3'- -CCUGAuGUaGagGGUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 5013 0.68 0.78252
Target:  5'- gGGGCcggGCGggCUCCgG-GGCCGGGGCc -3'
miRNA:   3'- -CCUGa--UGUa-GAGGgUgCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 81987 0.68 0.78252
Target:  5'- cGGGCUGCAcca-CgGCGGCCaGGGCGg -3'
miRNA:   3'- -CCUGAUGUagagGgUGCUGGcCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 46921 0.68 0.773335
Target:  5'- aGGACgacgACugagCUCCCucuuccucgccGCgGACUGGGGCGa -3'
miRNA:   3'- -CCUGa---UGua--GAGGG-----------UG-CUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 28110 0.68 0.773335
Target:  5'- gGGGC-GCggCUCCUcguCGGCuCGGGGCGc -3'
miRNA:   3'- -CCUGaUGuaGAGGGu--GCUG-GCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 24328 0.69 0.695177
Target:  5'- cGGAUgaggucgaucaggUGCAUCUCCCcguUGAUCGcGGGCu -3'
miRNA:   3'- -CCUG-------------AUGUAGAGGGu--GCUGGC-CCCGu -5'
29377 5' -57.2 NC_006151.1 + 50361 0.69 0.696173
Target:  5'- -cGCcGCGUCUCCgC-CGGCgGGGGCGa -3'
miRNA:   3'- ccUGaUGUAGAGG-GuGCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 34574 0.69 0.706094
Target:  5'- -cGCU-CGUCUCuCCGacCGGCUGGGGCGc -3'
miRNA:   3'- ccUGAuGUAGAG-GGU--GCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 21523 0.69 0.706094
Target:  5'- cGGGCUcggGCuUCggCCGgGGCCGGGGCc -3'
miRNA:   3'- -CCUGA---UGuAGagGGUgCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 88128 0.69 0.706094
Target:  5'- cGGGCggGCG-CUCCgCACGuugagcagGCCGGGGUg -3'
miRNA:   3'- -CCUGa-UGUaGAGG-GUGC--------UGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 133616 0.69 0.725744
Target:  5'- gGGGCgucuggGgGUCg-CgGCGGCCGGGGCGg -3'
miRNA:   3'- -CCUGa-----UgUAGagGgUGCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 125004 0.69 0.735455
Target:  5'- cGACUGCGUCcUCCGCGAggccUCGGaGGCc -3'
miRNA:   3'- cCUGAUGUAGaGGGUGCU----GGCC-CCGu -5'
29377 5' -57.2 NC_006151.1 + 9025 0.7 0.645953
Target:  5'- cGGACccc--CUCCCGCccGCCGGGGCGc -3'
miRNA:   3'- -CCUGauguaGAGGGUGc-UGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 8300 0.7 0.645953
Target:  5'- cGGGCgccGCGUCccgCCC-CGAgcccCCGGGGCGc -3'
miRNA:   3'- -CCUGa--UGUAGa--GGGuGCU----GGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 22801 0.7 0.66613
Target:  5'- uGGGC--CGUCUCCC-CGGCCgucaggugcagGGGGCGc -3'
miRNA:   3'- -CCUGauGUAGAGGGuGCUGG-----------CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 28240 0.71 0.615627
Target:  5'- cGGGCcgACGgg-CCCAuUGGCCGGGGCc -3'
miRNA:   3'- -CCUGa-UGUagaGGGU-GCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 135602 0.71 0.615627
Target:  5'- cGGCU-CAUaagccCUCCCACGGCCGcGGCGc -3'
miRNA:   3'- cCUGAuGUA-----GAGGGUGCUGGCcCCGU- -5'
29377 5' -57.2 NC_006151.1 + 39832 0.72 0.565417
Target:  5'- cGuCUuCGUCUCCUGCGgccGCCGGGGCc -3'
miRNA:   3'- cCuGAuGUAGAGGGUGC---UGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 62524 0.72 0.565417
Target:  5'- cGGuacCUGCAgaagCgCCugCACGGCCGGGGCAa -3'
miRNA:   3'- -CCu--GAUGUa---GaGG--GUGCUGGCCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.