miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 68648 0.66 0.873087
Target:  5'- cGGCUcCA-CUgCCACGGCCggcGGGGCc -3'
miRNA:   3'- cCUGAuGUaGAgGGUGCUGG---CCCCGu -5'
29377 5' -57.2 NC_006151.1 + 28284 0.66 0.873087
Target:  5'- gGGACgcggGCccggCUCCCccauuggccggcGCGuccCCGGGGCGc -3'
miRNA:   3'- -CCUGa---UGua--GAGGG------------UGCu--GGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 78682 0.66 0.880182
Target:  5'- uGGACggg--CUCUacgcCGGCCGGGGCc -3'
miRNA:   3'- -CCUGauguaGAGGgu--GCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 117303 0.66 0.880182
Target:  5'- -aGCUGCucggcgCUCgCCACG-CCGaGGGCGg -3'
miRNA:   3'- ccUGAUGua----GAG-GGUGCuGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 26372 0.66 0.880182
Target:  5'- gGGGCgcGCGUC-CCC-CGGCgGGcGGCGu -3'
miRNA:   3'- -CCUGa-UGUAGaGGGuGCUGgCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 55610 0.66 0.842657
Target:  5'- cGGACguggaGCGcCUCUCGCGGCUcuGGGaGCAg -3'
miRNA:   3'- -CCUGa----UGUaGAGGGUGCUGG--CCC-CGU- -5'
29377 5' -57.2 NC_006151.1 + 136883 0.66 0.842657
Target:  5'- aGGAgcGCcUCgcgcCCCACGGCUGGGuGCGc -3'
miRNA:   3'- -CCUgaUGuAGa---GGGUGCUGGCCC-CGU- -5'
29377 5' -57.2 NC_006151.1 + 81691 0.67 0.809248
Target:  5'- cGGCgACgGUCgCCCGCGcgagguccaGCCGGGGCGc -3'
miRNA:   3'- cCUGaUG-UAGaGGGUGC---------UGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 122963 0.67 0.817855
Target:  5'- gGGGC-GCGgacgCCgGCGACgGGGGCGu -3'
miRNA:   3'- -CCUGaUGUaga-GGgUGCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 91924 0.67 0.817855
Target:  5'- cGGAggcCAUCUCCaCGCcGCCGGGGg- -3'
miRNA:   3'- -CCUgauGUAGAGG-GUGcUGGCCCCgu -5'
29377 5' -57.2 NC_006151.1 + 48652 0.67 0.826297
Target:  5'- -cGCUGCAgcagcagCCCcCG-CCGGGGCAg -3'
miRNA:   3'- ccUGAUGUaga----GGGuGCuGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 61346 0.67 0.826297
Target:  5'- cGGCUGCGca--CCACGGCCGGGaggucGCAa -3'
miRNA:   3'- cCUGAUGUagagGGUGCUGGCCC-----CGU- -5'
29377 5' -57.2 NC_006151.1 + 131750 0.67 0.826297
Target:  5'- cGGGCgagGCgaccgucgcgGUCgcgaCCGCGGCCGcGGGCGc -3'
miRNA:   3'- -CCUGa--UG----------UAGag--GGUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 101582 0.67 0.834567
Target:  5'- cGGGCUACGccgccagcgagCUCCggugGGCCGGGGCc -3'
miRNA:   3'- -CCUGAUGUa----------GAGGgug-CUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 141666 0.67 0.834567
Target:  5'- cGGGCUcguuguggagGCAUgucugcCUCCCACGgcgGCUGGcGGCGg -3'
miRNA:   3'- -CCUGA----------UGUA------GAGGGUGC---UGGCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 21367 0.67 0.834567
Target:  5'- cGGGCUGCGgccaCCCgcugggcacgACGGCCggcGGGGCGa -3'
miRNA:   3'- -CCUGAUGUaga-GGG----------UGCUGG---CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 81576 0.67 0.834567
Target:  5'- cGGAgCaGgGUCUCgCGCGcgucGCCGGGGCc -3'
miRNA:   3'- -CCU-GaUgUAGAGgGUGC----UGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 45570 0.66 0.842657
Target:  5'- cGGGC--CAUCgUCCCgggACGGCCcgagGGGGCGg -3'
miRNA:   3'- -CCUGauGUAG-AGGG---UGCUGG----CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 4909 0.66 0.842657
Target:  5'- cGGGCcagggCUCCC-CGAgCGGGGUg -3'
miRNA:   3'- -CCUGauguaGAGGGuGCUgGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 78033 0.66 0.842657
Target:  5'- -cGCUACAUC-CCgGCGACgCGGcGCAu -3'
miRNA:   3'- ccUGAUGUAGaGGgUGCUG-GCCcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.