miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 21367 0.67 0.834567
Target:  5'- cGGGCUGCGgccaCCCgcugggcacgACGGCCggcGGGGCGa -3'
miRNA:   3'- -CCUGAUGUaga-GGG----------UGCUGG---CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 81691 0.67 0.809248
Target:  5'- cGGCgACgGUCgCCCGCGcgagguccaGCCGGGGCGc -3'
miRNA:   3'- cCUGaUG-UAGaGGGUGC---------UGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 122963 0.67 0.817855
Target:  5'- gGGGC-GCGgacgCCgGCGACgGGGGCGu -3'
miRNA:   3'- -CCUGaUGUaga-GGgUGCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 91924 0.67 0.817855
Target:  5'- cGGAggcCAUCUCCaCGCcGCCGGGGg- -3'
miRNA:   3'- -CCUgauGUAGAGG-GUGcUGGCCCCgu -5'
29377 5' -57.2 NC_006151.1 + 48652 0.67 0.826297
Target:  5'- -cGCUGCAgcagcagCCCcCG-CCGGGGCAg -3'
miRNA:   3'- ccUGAUGUaga----GGGuGCuGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 61346 0.67 0.826297
Target:  5'- cGGCUGCGca--CCACGGCCGGGaggucGCAa -3'
miRNA:   3'- cCUGAUGUagagGGUGCUGGCCC-----CGU- -5'
29377 5' -57.2 NC_006151.1 + 131750 0.67 0.826297
Target:  5'- cGGGCgagGCgaccgucgcgGUCgcgaCCGCGGCCGcGGGCGc -3'
miRNA:   3'- -CCUGa--UG----------UAGag--GGUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 101582 0.67 0.834567
Target:  5'- cGGGCUACGccgccagcgagCUCCggugGGCCGGGGCc -3'
miRNA:   3'- -CCUGAUGUa----------GAGGgug-CUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 141666 0.67 0.834567
Target:  5'- cGGGCUcguuguggagGCAUgucugcCUCCCACGgcgGCUGGcGGCGg -3'
miRNA:   3'- -CCUGA----------UGUA------GAGGGUGC---UGGCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 81576 0.67 0.834567
Target:  5'- cGGAgCaGgGUCUCgCGCGcgucGCCGGGGCc -3'
miRNA:   3'- -CCU-GaUgUAGAGgGUGC----UGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 17382 0.68 0.791572
Target:  5'- cGGAC--CGUgUCCgCACGA-CGGGGCGc -3'
miRNA:   3'- -CCUGauGUAgAGG-GUGCUgGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 128025 0.68 0.791572
Target:  5'- cGACgGCGUCUgcgacgCCCGCGGCagCGGcGGCAg -3'
miRNA:   3'- cCUGaUGUAGA------GGGUGCUG--GCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 100205 0.68 0.78252
Target:  5'- uGGACU-CGaUggCCACGGCCGcGGGCGc -3'
miRNA:   3'- -CCUGAuGUaGagGGUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 5013 0.68 0.78252
Target:  5'- gGGGCcggGCGggCUCCgG-GGCCGGGGCc -3'
miRNA:   3'- -CCUGa--UGUa-GAGGgUgCUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 81987 0.68 0.78252
Target:  5'- cGGGCUGCAcca-CgGCGGCCaGGGCGg -3'
miRNA:   3'- -CCUGAUGUagagGgUGCUGGcCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 46921 0.68 0.773335
Target:  5'- aGGACgacgACugagCUCCCucuuccucgccGCgGACUGGGGCGa -3'
miRNA:   3'- -CCUGa---UGua--GAGGG-----------UG-CUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 28110 0.68 0.773335
Target:  5'- gGGGC-GCggCUCCUcguCGGCuCGGGGCGc -3'
miRNA:   3'- -CCUGaUGuaGAGGGu--GCUG-GCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 10913 0.68 0.773335
Target:  5'- cGGACcgGgGUCgggCCCACGgcGCCGaGGGUg -3'
miRNA:   3'- -CCUGa-UgUAGa--GGGUGC--UGGC-CCCGu -5'
29377 5' -57.2 NC_006151.1 + 141360 0.68 0.764028
Target:  5'- aGGA--GCGUCUCCgagUAgGACgGGGGCGg -3'
miRNA:   3'- -CCUgaUGUAGAGG---GUgCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 101493 0.68 0.754606
Target:  5'- cGugUACGUCUucgacCCgCACGGCCacGGGCAg -3'
miRNA:   3'- cCugAUGUAGA-----GG-GUGCUGGc-CCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.