Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 5' | -57.2 | NC_006151.1 | + | 48652 | 0.67 | 0.826297 |
Target: 5'- -cGCUGCAgcagcagCCCcCG-CCGGGGCAg -3' miRNA: 3'- ccUGAUGUaga----GGGuGCuGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 91924 | 0.67 | 0.817855 |
Target: 5'- cGGAggcCAUCUCCaCGCcGCCGGGGg- -3' miRNA: 3'- -CCUgauGUAGAGG-GUGcUGGCCCCgu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 131750 | 0.67 | 0.826297 |
Target: 5'- cGGGCgagGCgaccgucgcgGUCgcgaCCGCGGCCGcGGGCGc -3' miRNA: 3'- -CCUGa--UG----------UAGag--GGUGCUGGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 122963 | 0.67 | 0.817855 |
Target: 5'- gGGGC-GCGgacgCCgGCGACgGGGGCGu -3' miRNA: 3'- -CCUGaUGUaga-GGgUGCUGgCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 81691 | 0.67 | 0.809248 |
Target: 5'- cGGCgACgGUCgCCCGCGcgagguccaGCCGGGGCGc -3' miRNA: 3'- cCUGaUG-UAGaGGGUGC---------UGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 117805 | 0.67 | 0.800485 |
Target: 5'- cGGCgggGCGgggC-CCCACGcuuuaagacccgGCCGGGGCGg -3' miRNA: 3'- cCUGa--UGUa--GaGGGUGC------------UGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 117303 | 0.66 | 0.880182 |
Target: 5'- -aGCUGCucggcgCUCgCCACG-CCGaGGGCGg -3' miRNA: 3'- ccUGAUGua----GAG-GGUGCuGGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 45570 | 0.66 | 0.842657 |
Target: 5'- cGGGC--CAUCgUCCCgggACGGCCcgagGGGGCGg -3' miRNA: 3'- -CCUGauGUAG-AGGG---UGCUGG----CCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 94773 | 0.66 | 0.858271 |
Target: 5'- -cGCaGCGUCUCCaugaGCGGCagguuGGGGCGc -3' miRNA: 3'- ccUGaUGUAGAGGg---UGCUGg----CCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 80309 | 0.66 | 0.870917 |
Target: 5'- cGGACcACA-CaUCCGCaggaguuuugggggGACCGGGGCGa -3' miRNA: 3'- -CCUGaUGUaGaGGGUG--------------CUGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 68648 | 0.66 | 0.873087 |
Target: 5'- cGGCUcCA-CUgCCACGGCCggcGGGGCc -3' miRNA: 3'- cCUGAuGUaGAgGGUGCUGG---CCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 28284 | 0.66 | 0.873087 |
Target: 5'- gGGACgcggGCccggCUCCCccauuggccggcGCGuccCCGGGGCGc -3' miRNA: 3'- -CCUGa---UGua--GAGGG------------UGCu--GGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 57521 | 0.66 | 0.850561 |
Target: 5'- cGGCgGCGgccgcCUCCggCGCGGCCGcGGGCAc -3' miRNA: 3'- cCUGaUGUa----GAGG--GUGCUGGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 55610 | 0.66 | 0.842657 |
Target: 5'- cGGACguggaGCGcCUCUCGCGGCUcuGGGaGCAg -3' miRNA: 3'- -CCUGa----UGUaGAGGGUGCUGG--CCC-CGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 136883 | 0.66 | 0.842657 |
Target: 5'- aGGAgcGCcUCgcgcCCCACGGCUGGGuGCGc -3' miRNA: 3'- -CCUgaUGuAGa---GGGUGCUGGCCC-CGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 78033 | 0.66 | 0.842657 |
Target: 5'- -cGCUACAUC-CCgGCGACgCGGcGCAu -3' miRNA: 3'- ccUGAUGUAGaGGgUGCUG-GCCcCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 4909 | 0.66 | 0.842657 |
Target: 5'- cGGGCcagggCUCCC-CGAgCGGGGUg -3' miRNA: 3'- -CCUGauguaGAGGGuGCUgGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 68821 | 0.66 | 0.858271 |
Target: 5'- cGAC--CAUCUCCCGCG-CCGGcgugugcucgaGGCGc -3' miRNA: 3'- cCUGauGUAGAGGGUGCuGGCC-----------CCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 73199 | 0.66 | 0.857509 |
Target: 5'- cGACUGCug--CCCGCGGgccaggcCCGcGGGCAc -3' miRNA: 3'- cCUGAUGuagaGGGUGCU-------GGC-CCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 5902 | 0.66 | 0.857509 |
Target: 5'- -cGCUGCGagugCUgCCggggucgGCGGCCGGGGCc -3' miRNA: 3'- ccUGAUGUa---GAgGG-------UGCUGGCCCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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