miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 5' -57.2 NC_006151.1 + 141666 0.67 0.834567
Target:  5'- cGGGCUcguuguggagGCAUgucugcCUCCCACGgcgGCUGGcGGCGg -3'
miRNA:   3'- -CCUGA----------UGUA------GAGGGUGC---UGGCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 141360 0.68 0.764028
Target:  5'- aGGA--GCGUCUCCgagUAgGACgGGGGCGg -3'
miRNA:   3'- -CCUgaUGUAGAGG---GUgCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 136883 0.66 0.842657
Target:  5'- aGGAgcGCcUCgcgcCCCACGGCUGGGuGCGc -3'
miRNA:   3'- -CCUgaUGuAGa---GGGUGCUGGCCC-CGU- -5'
29377 5' -57.2 NC_006151.1 + 136500 1.1 0.001864
Target:  5'- gGGACUACAUCUCCCACGACCGGGGCAg -3'
miRNA:   3'- -CCUGAUGUAGAGGGUGCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 135602 0.71 0.615627
Target:  5'- cGGCU-CAUaagccCUCCCACGGCCGcGGCGc -3'
miRNA:   3'- cCUGAuGUA-----GAGGGUGCUGGCcCCGU- -5'
29377 5' -57.2 NC_006151.1 + 133616 0.69 0.725744
Target:  5'- gGGGCgucuggGgGUCg-CgGCGGCCGGGGCGg -3'
miRNA:   3'- -CCUGa-----UgUAGagGgUGCUGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 132560 0.66 0.880182
Target:  5'- cGGGCaGCuccUCcUCCACGGCCGGGacucGCGg -3'
miRNA:   3'- -CCUGaUGu--AGaGGGUGCUGGCCC----CGU- -5'
29377 5' -57.2 NC_006151.1 + 131750 0.67 0.826297
Target:  5'- cGGGCgagGCgaccgucgcgGUCgcgaCCGCGGCCGcGGGCGc -3'
miRNA:   3'- -CCUGa--UG----------UAGag--GGUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 128025 0.68 0.791572
Target:  5'- cGACgGCGUCUgcgacgCCCGCGGCagCGGcGGCAg -3'
miRNA:   3'- cCUGaUGUAGA------GGGUGCUG--GCC-CCGU- -5'
29377 5' -57.2 NC_006151.1 + 125004 0.69 0.735455
Target:  5'- cGACUGCGUCcUCCGCGAggccUCGGaGGCc -3'
miRNA:   3'- cCUGAUGUAGaGGGUGCU----GGCC-CCGu -5'
29377 5' -57.2 NC_006151.1 + 122963 0.67 0.817855
Target:  5'- gGGGC-GCGgacgCCgGCGACgGGGGCGu -3'
miRNA:   3'- -CCUGaUGUaga-GGgUGCUGgCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 117805 0.67 0.800485
Target:  5'- cGGCgggGCGgggC-CCCACGcuuuaagacccgGCCGGGGCGg -3'
miRNA:   3'- cCUGa--UGUa--GaGGGUGC------------UGGCCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 117303 0.66 0.880182
Target:  5'- -aGCUGCucggcgCUCgCCACG-CCGaGGGCGg -3'
miRNA:   3'- ccUGAUGua----GAG-GGUGCuGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 113490 0.66 0.858271
Target:  5'- uGACUGCAUCgagCCCGUGcUCGaGGGCu -3'
miRNA:   3'- cCUGAUGUAGa--GGGUGCuGGC-CCCGu -5'
29377 5' -57.2 NC_006151.1 + 101582 0.67 0.834567
Target:  5'- cGGGCUACGccgccagcgagCUCCggugGGCCGGGGCc -3'
miRNA:   3'- -CCUGAUGUa----------GAGGgug-CUGGCCCCGu -5'
29377 5' -57.2 NC_006151.1 + 101493 0.68 0.754606
Target:  5'- cGugUACGUCUucgacCCgCACGGCCacGGGCAg -3'
miRNA:   3'- cCugAUGUAGA-----GG-GUGCUGGc-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 100205 0.68 0.78252
Target:  5'- uGGACU-CGaUggCCACGGCCGcGGGCGc -3'
miRNA:   3'- -CCUGAuGUaGagGGUGCUGGC-CCCGU- -5'
29377 5' -57.2 NC_006151.1 + 94773 0.66 0.858271
Target:  5'- -cGCaGCGUCUCCaugaGCGGCagguuGGGGCGc -3'
miRNA:   3'- ccUGaUGUAGAGGg---UGCUGg----CCCCGU- -5'
29377 5' -57.2 NC_006151.1 + 91924 0.67 0.817855
Target:  5'- cGGAggcCAUCUCCaCGCcGCCGGGGg- -3'
miRNA:   3'- -CCUgauGUAGAGG-GUGcUGGCCCCgu -5'
29377 5' -57.2 NC_006151.1 + 90676 0.76 0.342419
Target:  5'- cGGGCcGCuuGUCcCCCGCGGCgGGGGCGg -3'
miRNA:   3'- -CCUGaUG--UAGaGGGUGCUGgCCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.