Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29378 | 3' | -58.8 | NC_006151.1 | + | 114223 | 0.66 | 0.755626 |
Target: 5'- cGCGUguuccuggccucGguGgCCGCGCG-GGACCCCu- -3' miRNA: 3'- -UGCA------------UguUgGGCGCGCaCCUGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 86496 | 0.66 | 0.765069 |
Target: 5'- uGCGUGauCGGgCgGCGCGUGGGCaCCAu -3' miRNA: 3'- -UGCAU--GUUgGgCGCGCACCUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 118626 | 0.66 | 0.765069 |
Target: 5'- gACGU-CAACCgGCuCGUGGccgACCCCu- -3' miRNA: 3'- -UGCAuGUUGGgCGcGCACC---UGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 24235 | 0.66 | 0.774395 |
Target: 5'- gUGUACGGCUgGCG-GUGGGUCCCGg -3' miRNA: 3'- uGCAUGUUGGgCGCgCACCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 80690 | 0.66 | 0.783597 |
Target: 5'- -gGUucGCGGCCCG-GCGcGGGCCUCAc -3' miRNA: 3'- ugCA--UGUUGGGCgCGCaCCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 134827 | 0.67 | 0.736429 |
Target: 5'- nACGgugGCGACCgCGCGCGcacacacgcgGGGCCCg-- -3' miRNA: 3'- -UGCa--UGUUGG-GCGCGCa---------CCUGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 25112 | 0.67 | 0.736429 |
Target: 5'- uGCGUGCgAGCgCUGgGCGUGGACgCgCGAc -3' miRNA: 3'- -UGCAUG-UUG-GGCgCGCACCUGgG-GUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 58493 | 0.67 | 0.687031 |
Target: 5'- cACGUGgAugauGCCCGCGCGcGGGCCggCCu- -3' miRNA: 3'- -UGCAUgU----UGGGCGCGCaCCUGG--GGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 103298 | 0.67 | 0.687031 |
Target: 5'- cGCGcGCGGCUCGCGCGgcgcGACgCCGAg -3' miRNA: 3'- -UGCaUGUUGGGCGCGCac--CUGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 119107 | 0.67 | 0.687031 |
Target: 5'- cGCGUACGugAgCCGCGCGgccGGCCUCGu -3' miRNA: 3'- -UGCAUGU--UgGGCGCGCac-CUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 13989 | 0.67 | 0.697035 |
Target: 5'- cGCGUccccGgGGCCCaCGUGUGaGGCCCCGg -3' miRNA: 3'- -UGCA----UgUUGGGcGCGCAC-CUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 115117 | 0.67 | 0.697035 |
Target: 5'- gGCGccgccgGCGACgCGCGCGUGcGCCUCGg -3' miRNA: 3'- -UGCa-----UGUUGgGCGCGCACcUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 97736 | 0.67 | 0.706986 |
Target: 5'- gACGUGCAGCgCGCGgugcgggaacaCGUGG-CUCCGGa -3' miRNA: 3'- -UGCAUGUUGgGCGC-----------GCACCuGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 100935 | 0.67 | 0.706986 |
Target: 5'- gGCGUGCcccuGCUCGCGCaaacgugGGugCCCGu -3' miRNA: 3'- -UGCAUGu---UGGGCGCGca-----CCugGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 119314 | 0.67 | 0.706986 |
Target: 5'- cACGgccucGCAGCCCGCGac--GGCCCCGGg -3' miRNA: 3'- -UGCa----UGUUGGGCGCgcacCUGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 119734 | 0.67 | 0.706986 |
Target: 5'- cACGUACcGCgCCGC-CGUGGACCg--- -3' miRNA: 3'- -UGCAUGuUG-GGCGcGCACCUGGgguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 75406 | 0.67 | 0.716874 |
Target: 5'- uGCGUGCGcggguccgggagGCCCG-GCGUGGGCgCgAAg -3' miRNA: 3'- -UGCAUGU------------UGGGCgCGCACCUGgGgUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 103525 | 0.67 | 0.716874 |
Target: 5'- gACGUcCGACCCcgGCGCGcuggUGGGCgCCGGg -3' miRNA: 3'- -UGCAuGUUGGG--CGCGC----ACCUGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 52164 | 0.67 | 0.726692 |
Target: 5'- cACGUGCGucucgaagggcGCgCGCGCGaacGcGGCCCCGAa -3' miRNA: 3'- -UGCAUGU-----------UGgGCGCGCa--C-CUGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 105599 | 0.67 | 0.726692 |
Target: 5'- cGCGgaGCGGCugCCGCG-GUGGAUCCCGc -3' miRNA: 3'- -UGCa-UGUUG--GGCGCgCACCUGGGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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