Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29378 | 3' | -58.8 | NC_006151.1 | + | 98219 | 0.75 | 0.285202 |
Target: 5'- uGCGcgGCGgcGCCCGCGCGcGGACCCUc- -3' miRNA: 3'- -UGCa-UGU--UGGGCGCGCaCCUGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 99619 | 0.69 | 0.565827 |
Target: 5'- gGCGcACAGCgCCGCGCGcGaGGCCCuCAAc -3' miRNA: 3'- -UGCaUGUUG-GGCGCGCaC-CUGGG-GUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 100854 | 0.68 | 0.666897 |
Target: 5'- aGCGU-CAACgUGCGCGacUGGGCCgCCGu -3' miRNA: 3'- -UGCAuGUUGgGCGCGC--ACCUGG-GGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 100935 | 0.67 | 0.706986 |
Target: 5'- gGCGUGCcccuGCUCGCGCaaacgugGGugCCCGu -3' miRNA: 3'- -UGCAUGu---UGGGCGCGca-----CCugGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 102491 | 0.72 | 0.415277 |
Target: 5'- gGCGUGCuucaugGACgCCGCgGCGcgGGACCCCGg -3' miRNA: 3'- -UGCAUG------UUG-GGCG-CGCa-CCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 102528 | 0.68 | 0.64361 |
Target: 5'- gGCGUcuACGACCagacggugguggcgCGCGCGcGGGCCCUg- -3' miRNA: 3'- -UGCA--UGUUGG--------------GCGCGCaCCUGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 103298 | 0.67 | 0.687031 |
Target: 5'- cGCGcGCGGCUCGCGCGgcgcGACgCCGAg -3' miRNA: 3'- -UGCaUGUUGGGCGCGCac--CUGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 103525 | 0.67 | 0.716874 |
Target: 5'- gACGUcCGACCCcgGCGCGcuggUGGGCgCCGGg -3' miRNA: 3'- -UGCAuGUUGGG--CGCGC----ACCUGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 105599 | 0.67 | 0.726692 |
Target: 5'- cGCGgaGCGGCugCCGCG-GUGGAUCCCGc -3' miRNA: 3'- -UGCa-UGUUG--GGCGCgCACCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 106265 | 0.68 | 0.676982 |
Target: 5'- cUGUuCAACUuuaCGCGCGUGGACCUg-- -3' miRNA: 3'- uGCAuGUUGG---GCGCGCACCUGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 106621 | 0.67 | 0.736429 |
Target: 5'- cGCGUACGACgCCGCggucaccgaGCGccUGGACgCCGc -3' miRNA: 3'- -UGCAUGUUG-GGCG---------CGC--ACCUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 106891 | 0.71 | 0.469108 |
Target: 5'- cUGUGCGACCUGCGCG---ACCCCGc -3' miRNA: 3'- uGCAUGUUGGGCGCGCaccUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 107250 | 0.68 | 0.636509 |
Target: 5'- cAUGgGCGACgCC-CGCGUGGACCCg-- -3' miRNA: 3'- -UGCaUGUUG-GGcGCGCACCUGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 113292 | 0.71 | 0.469108 |
Target: 5'- gGCGUACGcgcgcuaCCGCGCgGUGGACgCCAc -3' miRNA: 3'- -UGCAUGUug-----GGCGCG-CACCUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 114223 | 0.66 | 0.755626 |
Target: 5'- cGCGUguuccuggccucGguGgCCGCGCG-GGACCCCu- -3' miRNA: 3'- -UGCA------------UguUgGGCGCGCaCCUGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 114334 | 0.68 | 0.626362 |
Target: 5'- cUGcGCGACgUGCGCGUgcucuucuucgaGGACCCCGAc -3' miRNA: 3'- uGCaUGUUGgGCGCGCA------------CCUGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 114421 | 0.71 | 0.459883 |
Target: 5'- cACGUGCAcCaCCGCGUGcUGGACCgCCu- -3' miRNA: 3'- -UGCAUGUuG-GGCGCGC-ACCUGG-GGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 115117 | 0.67 | 0.697035 |
Target: 5'- gGCGccgccgGCGACgCGCGCGUGcGCCUCGg -3' miRNA: 3'- -UGCa-----UGUUGgGCGCGCACcUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 115595 | 0.72 | 0.406678 |
Target: 5'- uCGaGCAGCUCGCGCGUGG-CCCa-- -3' miRNA: 3'- uGCaUGUUGGGCGCGCACCuGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 117224 | 0.69 | 0.595978 |
Target: 5'- gGCGUcgACGACgCGCGCGUccacgucggcGGGCCCgAGg -3' miRNA: 3'- -UGCA--UGUUGgGCGCGCA----------CCUGGGgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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