miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 58493 0.67 0.687031
Target:  5'- cACGUGgAugauGCCCGCGCGcGGGCCggCCu- -3'
miRNA:   3'- -UGCAUgU----UGGGCGCGCaCCUGG--GGuu -5'
29378 3' -58.8 NC_006151.1 + 59121 0.68 0.676982
Target:  5'- gGCGUACAgcuGCCgGUGgGUGGcGCCCgCGGg -3'
miRNA:   3'- -UGCAUGU---UGGgCGCgCACC-UGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 59197 0.7 0.526289
Target:  5'- uUGcGCAGguucuUCaCGCGCGUGGGCCCCGGg -3'
miRNA:   3'- uGCaUGUU-----GG-GCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 59521 0.7 0.526289
Target:  5'- cGCGcGCAGCgCCGCGUGaGGGCCCa-- -3'
miRNA:   3'- -UGCaUGUUG-GGCGCGCaCCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 66552 0.69 0.606089
Target:  5'- cGCGcGCGGCCgCGcCGcCGUGGACCCg-- -3'
miRNA:   3'- -UGCaUGUUGG-GC-GC-GCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 67299 0.7 0.526289
Target:  5'- ---cGCGACgCGCGCGUGGACCacguCAAg -3'
miRNA:   3'- ugcaUGUUGgGCGCGCACCUGGg---GUU- -5'
29378 3' -58.8 NC_006151.1 + 68627 0.69 0.595978
Target:  5'- cGCGaACuGCCCGCGCGUcgccGGCUCCAc -3'
miRNA:   3'- -UGCaUGuUGGGCGCGCAc---CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 69630 0.71 0.478426
Target:  5'- cGCGgucgGCGuCCCGCGCGUGcGGCgCCGc -3'
miRNA:   3'- -UGCa---UGUuGGGCGCGCAC-CUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 72021 0.72 0.415277
Target:  5'- cACGUcgGCGcCCCGCGCG-GGcGCCCCGc -3'
miRNA:   3'- -UGCA--UGUuGGGCGCGCaCC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 75406 0.67 0.716874
Target:  5'- uGCGUGCGcggguccgggagGCCCG-GCGUGGGCgCgAAg -3'
miRNA:   3'- -UGCAUGU------------UGGGCgCGCACCUGgGgUU- -5'
29378 3' -58.8 NC_006151.1 + 77506 0.7 0.542979
Target:  5'- uACGUGCGcacggagcuggcgcGCcucggCCGCGCGUGGgccGCCCCGc -3'
miRNA:   3'- -UGCAUGU--------------UG-----GGCGCGCACC---UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 77964 0.66 0.746077
Target:  5'- aGCGUGC-GCCCGCGCc-GGuACgCCGAg -3'
miRNA:   3'- -UGCAUGuUGGGCGCGcaCC-UGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 80690 0.66 0.783597
Target:  5'- -gGUucGCGGCCCG-GCGcGGGCCUCAc -3'
miRNA:   3'- ugCA--UGUUGGGCgCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 82126 0.72 0.432805
Target:  5'- cACGUggaaGCGGCCCGCGgGcGGGCCCg-- -3'
miRNA:   3'- -UGCA----UGUUGGGCGCgCaCCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 82600 0.69 0.61622
Target:  5'- gACGaACAggguggGCCCGCGCGcGGGCgCCGc -3'
miRNA:   3'- -UGCaUGU------UGGGCGCGCaCCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 83001 0.69 0.585892
Target:  5'- cACGgccGCGGCgcagaCGCGCGgcgaGGGCCCCAGg -3'
miRNA:   3'- -UGCa--UGUUGg----GCGCGCa---CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 85345 0.78 0.194707
Target:  5'- aGCGUGCucgccgcgcuggcgcGCCUGCGCGUGGuCCCCGg -3'
miRNA:   3'- -UGCAUGu--------------UGGGCGCGCACCuGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 86326 0.8 0.14367
Target:  5'- cCGUGCucGCCCGCGcCGUGGGCCCgGAc -3'
miRNA:   3'- uGCAUGu-UGGGCGC-GCACCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 86496 0.66 0.765069
Target:  5'- uGCGUGauCGGgCgGCGCGUGGGCaCCAu -3'
miRNA:   3'- -UGCAU--GUUgGgCGCGCACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 97736 0.67 0.706986
Target:  5'- gACGUGCAGCgCGCGgugcgggaacaCGUGG-CUCCGGa -3'
miRNA:   3'- -UGCAUGUUGgGCGC-----------GCACCuGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.