Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29378 | 3' | -58.8 | NC_006151.1 | + | 106891 | 0.71 | 0.469108 |
Target: 5'- cUGUGCGACCUGCGCG---ACCCCGc -3' miRNA: 3'- uGCAUGUUGGGCGCGCaccUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 69630 | 0.71 | 0.478426 |
Target: 5'- cGCGgucgGCGuCCCGCGCGUGcGGCgCCGc -3' miRNA: 3'- -UGCa---UGUuGGGCGCGCAC-CUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 129781 | 0.71 | 0.478426 |
Target: 5'- gGCGUcGCu-CCCGCcgGCGUGGGCCCgCAu -3' miRNA: 3'- -UGCA-UGuuGGGCG--CGCACCUGGG-GUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 128220 | 0.71 | 0.478426 |
Target: 5'- gGCGUGCGACgaGCuCGUGGGCgCCAGg -3' miRNA: 3'- -UGCAUGUUGggCGcGCACCUGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 135884 | 0.71 | 0.48689 |
Target: 5'- cGCGUGCGGCCCGUGUucGUcgccgccGcGACCCCGg -3' miRNA: 3'- -UGCAUGUUGGGCGCG--CA-------C-CUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 124672 | 0.71 | 0.49733 |
Target: 5'- --cUACGGCCUGCGCGaggGGGCCCaCGGg -3' miRNA: 3'- ugcAUGUUGGGCGCGCa--CCUGGG-GUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 59521 | 0.7 | 0.526289 |
Target: 5'- cGCGcGCAGCgCCGCGUGaGGGCCCa-- -3' miRNA: 3'- -UGCaUGUUG-GGCGCGCaCCUGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 67299 | 0.7 | 0.526289 |
Target: 5'- ---cGCGACgCGCGCGUGGACCacguCAAg -3' miRNA: 3'- ugcaUGUUGgGCGCGCACCUGGg---GUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 59197 | 0.7 | 0.526289 |
Target: 5'- uUGcGCAGguucuUCaCGCGCGUGGGCCCCGGg -3' miRNA: 3'- uGCaUGUU-----GG-GCGCGCACCUGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 77506 | 0.7 | 0.542979 |
Target: 5'- uACGUGCGcacggagcuggcgcGCcucggCCGCGCGUGGgccGCCCCGc -3' miRNA: 3'- -UGCAUGU--------------UG-----GGCGCGCACC---UGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 99619 | 0.69 | 0.565827 |
Target: 5'- gGCGcACAGCgCCGCGCGcGaGGCCCuCAAc -3' miRNA: 3'- -UGCaUGUUG-GGCGCGCaC-CUGGG-GUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 125183 | 0.69 | 0.57584 |
Target: 5'- aGCGccuCGGCCUcgccgGCGuCGUGGGCCCCGc -3' miRNA: 3'- -UGCau-GUUGGG-----CGC-GCACCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 83001 | 0.69 | 0.585892 |
Target: 5'- cACGgccGCGGCgcagaCGCGCGgcgaGGGCCCCAGg -3' miRNA: 3'- -UGCa--UGUUGg----GCGCGCa---CCUGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 68627 | 0.69 | 0.595978 |
Target: 5'- cGCGaACuGCCCGCGCGUcgccGGCUCCAc -3' miRNA: 3'- -UGCaUGuUGGGCGCGCAc---CUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 117224 | 0.69 | 0.595978 |
Target: 5'- gGCGUcgACGACgCGCGCGUccacgucggcGGGCCCgAGg -3' miRNA: 3'- -UGCA--UGUUGgGCGCGCA----------CCUGGGgUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 139006 | 0.69 | 0.595978 |
Target: 5'- ---cGCGACCUcCGCGaGGACCCCAu -3' miRNA: 3'- ugcaUGUUGGGcGCGCaCCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 66552 | 0.69 | 0.606089 |
Target: 5'- cGCGcGCGGCCgCGcCGcCGUGGACCCg-- -3' miRNA: 3'- -UGCaUGUUGG-GC-GC-GCACCUGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 82600 | 0.69 | 0.61622 |
Target: 5'- gACGaACAggguggGCCCGCGCGcGGGCgCCGc -3' miRNA: 3'- -UGCaUGU------UGGGCGCGCaCCUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 134753 | 0.69 | 0.61622 |
Target: 5'- cCGaGCAGCgCGCGCG-GGGCCCgCGg -3' miRNA: 3'- uGCaUGUUGgGCGCGCaCCUGGG-GUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 128190 | 0.68 | 0.626362 |
Target: 5'- gGCGaGCGugCCGCGCuccaUGGcGCCCCAn -3' miRNA: 3'- -UGCaUGUugGGCGCGc---ACC-UGGGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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