miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 136318 1.05 0.002613
Target:  5'- cACGUACAACCCGCGCGUGGACCCCAAc -3'
miRNA:   3'- -UGCAUGUUGGGCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 122311 0.81 0.12003
Target:  5'- cACGcgGCAGCUggcggUGCGCGUGGACCCCGAg -3'
miRNA:   3'- -UGCa-UGUUGG-----GCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 86326 0.8 0.14367
Target:  5'- cCGUGCucGCCCGCGcCGUGGGCCCgGAc -3'
miRNA:   3'- uGCAUGu-UGGGCGC-GCACCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 121045 0.79 0.171495
Target:  5'- uUGUGCuggccuGCCCGCGCGUGGGCUUCAc -3'
miRNA:   3'- uGCAUGu-----UGGGCGCGCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 85345 0.78 0.194707
Target:  5'- aGCGUGCucgccgcgcuggcgcGCCUGCGCGUGGuCCCCGg -3'
miRNA:   3'- -UGCAUGu--------------UGGGCGCGCACCuGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 39614 0.76 0.253004
Target:  5'- aACGUGCGcuacacggugagcACCCGCGCc-GGGCCCCGGa -3'
miRNA:   3'- -UGCAUGU-------------UGGGCGCGcaCCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 98219 0.75 0.285202
Target:  5'- uGCGcgGCGgcGCCCGCGCGcGGACCCUc- -3'
miRNA:   3'- -UGCa-UGU--UGGGCGCGCaCCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 32871 0.74 0.312655
Target:  5'- -aGgccCGACCCGCGCGggGGGCCCCc- -3'
miRNA:   3'- ugCau-GUUGGGCGCGCa-CCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 128606 0.74 0.342067
Target:  5'- cGCGcGCcACCCGCgGCGUGcGCCCCAGg -3'
miRNA:   3'- -UGCaUGuUGGGCG-CGCACcUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 15323 0.73 0.357505
Target:  5'- gACGUcuACGACCCGCGCGUccucuCCCCGc -3'
miRNA:   3'- -UGCA--UGUUGGGCGCGCAccu--GGGGUu -5'
29378 3' -58.8 NC_006151.1 + 50016 0.73 0.373425
Target:  5'- cGCGcGCGGCCCGCGCG-GcGcCCCCGGg -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCaC-CuGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 134804 0.73 0.381564
Target:  5'- cGCG-GCGGCCCGCGCc-GGACCCgGAc -3'
miRNA:   3'- -UGCaUGUUGGGCGCGcaCCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 115595 0.72 0.406678
Target:  5'- uCGaGCAGCUCGCGCGUGG-CCCa-- -3'
miRNA:   3'- uGCaUGUUGGGCGCGCACCuGGGguu -5'
29378 3' -58.8 NC_006151.1 + 130534 0.72 0.414412
Target:  5'- cGCGUACAcgccCCCGCGCGaGGgcggcgcgcugccGCCCCAc -3'
miRNA:   3'- -UGCAUGUu---GGGCGCGCaCC-------------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 72021 0.72 0.415277
Target:  5'- cACGUcgGCGcCCCGCGCG-GGcGCCCCGc -3'
miRNA:   3'- -UGCA--UGUuGGGCGCGCaCC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 102491 0.72 0.415277
Target:  5'- gGCGUGCuucaugGACgCCGCgGCGcgGGACCCCGg -3'
miRNA:   3'- -UGCAUG------UUG-GGCG-CGCa-CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 82126 0.72 0.432805
Target:  5'- cACGUggaaGCGGCCCGCGgGcGGGCCCg-- -3'
miRNA:   3'- -UGCA----UGUUGGGCGCgCaCCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 133157 0.72 0.432805
Target:  5'- gGCG-GCGGCgCGgGCGUGGGCCUCGg -3'
miRNA:   3'- -UGCaUGUUGgGCgCGCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 114421 0.71 0.459883
Target:  5'- cACGUGCAcCaCCGCGUGcUGGACCgCCu- -3'
miRNA:   3'- -UGCAUGUuG-GGCGCGC-ACCUGG-GGuu -5'
29378 3' -58.8 NC_006151.1 + 113292 0.71 0.469108
Target:  5'- gGCGUACGcgcgcuaCCGCGCgGUGGACgCCAc -3'
miRNA:   3'- -UGCAUGUug-----GGCGCG-CACCUGgGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.