miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 52587 0.66 0.746077
Target:  5'- gGCGcUGCcGCCCuGCGCGUGGACg---- -3'
miRNA:   3'- -UGC-AUGuUGGG-CGCGCACCUGggguu -5'
29378 3' -58.8 NC_006151.1 + 136318 1.05 0.002613
Target:  5'- cACGUACAACCCGCGCGUGGACCCCAAc -3'
miRNA:   3'- -UGCAUGUUGGGCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 75406 0.67 0.716874
Target:  5'- uGCGUGCGcggguccgggagGCCCG-GCGUGGGCgCgAAg -3'
miRNA:   3'- -UGCAUGU------------UGGGCgCGCACCUGgGgUU- -5'
29378 3' -58.8 NC_006151.1 + 103525 0.67 0.716874
Target:  5'- gACGUcCGACCCcgGCGCGcuggUGGGCgCCGGg -3'
miRNA:   3'- -UGCAuGUUGGG--CGCGC----ACCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 52164 0.67 0.726692
Target:  5'- cACGUGCGucucgaagggcGCgCGCGCGaacGcGGCCCCGAa -3'
miRNA:   3'- -UGCAUGU-----------UGgGCGCGCa--C-CUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 105599 0.67 0.726692
Target:  5'- cGCGgaGCGGCugCCGCG-GUGGAUCCCGc -3'
miRNA:   3'- -UGCa-UGUUG--GGCGCgCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 25112 0.67 0.736429
Target:  5'- uGCGUGCgAGCgCUGgGCGUGGACgCgCGAc -3'
miRNA:   3'- -UGCAUG-UUG-GGCgCGCACCUGgG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 134827 0.67 0.736429
Target:  5'- nACGgugGCGACCgCGCGCGcacacacgcgGGGCCCg-- -3'
miRNA:   3'- -UGCa--UGUUGG-GCGCGCa---------CCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 106621 0.67 0.736429
Target:  5'- cGCGUACGACgCCGCggucaccgaGCGccUGGACgCCGc -3'
miRNA:   3'- -UGCAUGUUG-GGCG---------CGC--ACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 122032 0.67 0.740299
Target:  5'- cACGUACGGCggGCGCGUGGAgacggagcugcaguuCCuCCAc -3'
miRNA:   3'- -UGCAUGUUGggCGCGCACCU---------------GG-GGUu -5'
29378 3' -58.8 NC_006151.1 + 15037 0.66 0.746077
Target:  5'- -gGUGCGcguCCacggCGCGCG-GGGCCCCGg -3'
miRNA:   3'- ugCAUGUu--GG----GCGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 10629 0.66 0.783597
Target:  5'- cGCGUGCGcucguGCCgGCGCGgcauCCCCGc -3'
miRNA:   3'- -UGCAUGU-----UGGgCGCGCaccuGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 77964 0.66 0.746077
Target:  5'- aGCGUGC-GCCCGCGCc-GGuACgCCGAg -3'
miRNA:   3'- -UGCAUGuUGGGCGCGcaCC-UGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 2327 0.66 0.746077
Target:  5'- aGCGggGCGGCCuCG-GCGUcGGGCUCCAGc -3'
miRNA:   3'- -UGCa-UGUUGG-GCgCGCA-CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 130257 0.66 0.746077
Target:  5'- cGCGgaagaGGCCgGCGCGcGG-CCCCGAg -3'
miRNA:   3'- -UGCaug--UUGGgCGCGCaCCuGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 20142 0.66 0.755626
Target:  5'- gGCGccGCGggGgCgGCGCGUGGACCgCCGGg -3'
miRNA:   3'- -UGCa-UGU--UgGgCGCGCACCUGG-GGUU- -5'
29378 3' -58.8 NC_006151.1 + 114223 0.66 0.755626
Target:  5'- cGCGUguuccuggccucGguGgCCGCGCG-GGACCCCu- -3'
miRNA:   3'- -UGCA------------UguUgGGCGCGCaCCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 86496 0.66 0.765069
Target:  5'- uGCGUGauCGGgCgGCGCGUGGGCaCCAu -3'
miRNA:   3'- -UGCAU--GUUgGgCGCGCACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 118626 0.66 0.765069
Target:  5'- gACGU-CAACCgGCuCGUGGccgACCCCu- -3'
miRNA:   3'- -UGCAuGUUGGgCGcGCACC---UGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 24235 0.66 0.774395
Target:  5'- gUGUACGGCUgGCG-GUGGGUCCCGg -3'
miRNA:   3'- uGCAUGUUGGgCGCgCACCUGGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.