miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 2327 0.66 0.746077
Target:  5'- aGCGggGCGGCCuCG-GCGUcGGGCUCCAGc -3'
miRNA:   3'- -UGCa-UGUUGG-GCgCGCA-CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 3931 0.68 0.666897
Target:  5'- aGCGgggGCAGgCCGgGCGcGGGCUCCGc -3'
miRNA:   3'- -UGCa--UGUUgGGCgCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 4028 0.68 0.646652
Target:  5'- gGCGUagguccagGCGGCCuCGCggGCGcGGGCCCCGu -3'
miRNA:   3'- -UGCA--------UGUUGG-GCG--CGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 5111 0.68 0.646652
Target:  5'- gACGgugGCGGCCCgGCGCGggcgagugGGGCgCCGGg -3'
miRNA:   3'- -UGCa--UGUUGGG-CGCGCa-------CCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 10629 0.66 0.783597
Target:  5'- cGCGUGCGcucguGCCgGCGCGgcauCCCCGc -3'
miRNA:   3'- -UGCAUGU-----UGGgCGCGCaccuGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 13989 0.67 0.697035
Target:  5'- cGCGUccccGgGGCCCaCGUGUGaGGCCCCGg -3'
miRNA:   3'- -UGCA----UgUUGGGcGCGCAC-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 15037 0.66 0.746077
Target:  5'- -gGUGCGcguCCacggCGCGCG-GGGCCCCGg -3'
miRNA:   3'- ugCAUGUu--GG----GCGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 15323 0.73 0.357505
Target:  5'- gACGUcuACGACCCGCGCGUccucuCCCCGc -3'
miRNA:   3'- -UGCA--UGUUGGGCGCGCAccu--GGGGUu -5'
29378 3' -58.8 NC_006151.1 + 20142 0.66 0.755626
Target:  5'- gGCGccGCGggGgCgGCGCGUGGACCgCCGGg -3'
miRNA:   3'- -UGCa-UGU--UgGgCGCGCACCUGG-GGUU- -5'
29378 3' -58.8 NC_006151.1 + 20704 0.67 0.687031
Target:  5'- cACGUACGACCC-CGCGUccggcgGGGCCg--- -3'
miRNA:   3'- -UGCAUGUUGGGcGCGCA------CCUGGgguu -5'
29378 3' -58.8 NC_006151.1 + 24235 0.66 0.774395
Target:  5'- gUGUACGGCUgGCG-GUGGGUCCCGg -3'
miRNA:   3'- uGCAUGUUGGgCGCgCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 25112 0.67 0.736429
Target:  5'- uGCGUGCgAGCgCUGgGCGUGGACgCgCGAc -3'
miRNA:   3'- -UGCAUG-UUG-GGCgCGCACCUGgG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 30921 0.68 0.646652
Target:  5'- cGCGgGCGGCCCGCGCGgaucGCCCg-- -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCacc-UGGGguu -5'
29378 3' -58.8 NC_006151.1 + 32871 0.74 0.312655
Target:  5'- -aGgccCGACCCGCGCGggGGGCCCCc- -3'
miRNA:   3'- ugCau-GUUGGGCGCGCa-CCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 33963 0.68 0.646652
Target:  5'- gGCGggacGCGgcGCCCGCGCGgGGAcacucuuucCCCCGGa -3'
miRNA:   3'- -UGCa---UGU--UGGGCGCGCaCCU---------GGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 39614 0.76 0.253004
Target:  5'- aACGUGCGcuacacggugagcACCCGCGCc-GGGCCCCGGa -3'
miRNA:   3'- -UGCAUGU-------------UGGGCGCGcaCCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 50016 0.73 0.373425
Target:  5'- cGCGcGCGGCCCGCGCG-GcGcCCCCGGg -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCaC-CuGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 50855 0.68 0.656784
Target:  5'- gGCGgcCGcccuCCCGCGCccccGGACCCCGu -3'
miRNA:   3'- -UGCauGUu---GGGCGCGca--CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 52164 0.67 0.726692
Target:  5'- cACGUGCGucucgaagggcGCgCGCGCGaacGcGGCCCCGAa -3'
miRNA:   3'- -UGCAUGU-----------UGgGCGCGCa--C-CUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 52587 0.66 0.746077
Target:  5'- gGCGcUGCcGCCCuGCGCGUGGACg---- -3'
miRNA:   3'- -UGC-AUGuUGGG-CGCGCACCUGggguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.