miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 100935 0.67 0.706986
Target:  5'- gGCGUGCcccuGCUCGCGCaaacgugGGugCCCGu -3'
miRNA:   3'- -UGCAUGu---UGGGCGCGca-----CCugGGGUu -5'
29378 3' -58.8 NC_006151.1 + 119314 0.67 0.706986
Target:  5'- cACGgccucGCAGCCCGCGac--GGCCCCGGg -3'
miRNA:   3'- -UGCa----UGUUGGGCGCgcacCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 119734 0.67 0.706986
Target:  5'- cACGUACcGCgCCGC-CGUGGACCg--- -3'
miRNA:   3'- -UGCAUGuUG-GGCGcGCACCUGGgguu -5'
29378 3' -58.8 NC_006151.1 + 122032 0.67 0.740299
Target:  5'- cACGUACGGCggGCGCGUGGAgacggagcugcaguuCCuCCAc -3'
miRNA:   3'- -UGCAUGUUGggCGCGCACCU---------------GG-GGUu -5'
29378 3' -58.8 NC_006151.1 + 106621 0.67 0.736429
Target:  5'- cGCGUACGACgCCGCggucaccgaGCGccUGGACgCCGc -3'
miRNA:   3'- -UGCAUGUUG-GGCG---------CGC--ACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 134827 0.67 0.736429
Target:  5'- nACGgugGCGACCgCGCGCGcacacacgcgGGGCCCg-- -3'
miRNA:   3'- -UGCa--UGUUGG-GCGCGCa---------CCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 25112 0.67 0.736429
Target:  5'- uGCGUGCgAGCgCUGgGCGUGGACgCgCGAc -3'
miRNA:   3'- -UGCAUG-UUG-GGCgCGCACCUGgG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 105599 0.67 0.726692
Target:  5'- cGCGgaGCGGCugCCGCG-GUGGAUCCCGc -3'
miRNA:   3'- -UGCa-UGUUG--GGCGCgCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 52164 0.67 0.726692
Target:  5'- cACGUGCGucucgaagggcGCgCGCGCGaacGcGGCCCCGAa -3'
miRNA:   3'- -UGCAUGU-----------UGgGCGCGCa--C-CUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 103525 0.67 0.716874
Target:  5'- gACGUcCGACCCcgGCGCGcuggUGGGCgCCGGg -3'
miRNA:   3'- -UGCAuGUUGGG--CGCGC----ACCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 75406 0.67 0.716874
Target:  5'- uGCGUGCGcggguccgggagGCCCG-GCGUGGGCgCgAAg -3'
miRNA:   3'- -UGCAUGU------------UGGGCgCGCACCUGgGgUU- -5'
29378 3' -58.8 NC_006151.1 + 5111 0.68 0.646652
Target:  5'- gACGgugGCGGCCCgGCGCGggcgagugGGGCgCCGGg -3'
miRNA:   3'- -UGCa--UGUUGGG-CGCGCa-------CCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 30921 0.68 0.646652
Target:  5'- cGCGgGCGGCCCGCGCGgaucGCCCg-- -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCacc-UGGGguu -5'
29378 3' -58.8 NC_006151.1 + 50855 0.68 0.656784
Target:  5'- gGCGgcCGcccuCCCGCGCccccGGACCCCGu -3'
miRNA:   3'- -UGCauGUu---GGGCGCGca--CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 117789 0.68 0.656784
Target:  5'- gGCGggGCGccacGCCCG-GCGgggcgGGGCCCCAc -3'
miRNA:   3'- -UGCa-UGU----UGGGCgCGCa----CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 3931 0.68 0.666897
Target:  5'- aGCGgggGCAGgCCGgGCGcGGGCUCCGc -3'
miRNA:   3'- -UGCa--UGUUgGGCgCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 100854 0.68 0.666897
Target:  5'- aGCGU-CAACgUGCGCGacUGGGCCgCCGu -3'
miRNA:   3'- -UGCAuGUUGgGCGCGC--ACCUGG-GGUu -5'
29378 3' -58.8 NC_006151.1 + 59121 0.68 0.676982
Target:  5'- gGCGUACAgcuGCCgGUGgGUGGcGCCCgCGGg -3'
miRNA:   3'- -UGCAUGU---UGGgCGCgCACC-UGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 106265 0.68 0.676982
Target:  5'- cUGUuCAACUuuaCGCGCGUGGACCUg-- -3'
miRNA:   3'- uGCAuGUUGG---GCGCGCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 4028 0.68 0.646652
Target:  5'- gGCGUagguccagGCGGCCuCGCggGCGcGGGCCCCGu -3'
miRNA:   3'- -UGCA--------UGUUGG-GCG--CGCaCCUGGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.