miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 121770 0.68 0.646652
Target:  5'- aGCGcUGCGAcCCCGCG-GUGGugcgcgagcugGCCCCAc -3'
miRNA:   3'- -UGC-AUGUU-GGGCGCgCACC-----------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 121045 0.79 0.171495
Target:  5'- uUGUGCuggccuGCCCGCGCGUGGGCUUCAc -3'
miRNA:   3'- uGCAUGu-----UGGGCGCGCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 119734 0.67 0.706986
Target:  5'- cACGUACcGCgCCGC-CGUGGACCg--- -3'
miRNA:   3'- -UGCAUGuUG-GGCGcGCACCUGGgguu -5'
29378 3' -58.8 NC_006151.1 + 119314 0.67 0.706986
Target:  5'- cACGgccucGCAGCCCGCGac--GGCCCCGGg -3'
miRNA:   3'- -UGCa----UGUUGGGCGCgcacCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 119107 0.67 0.687031
Target:  5'- cGCGUACGugAgCCGCGCGgccGGCCUCGu -3'
miRNA:   3'- -UGCAUGU--UgGGCGCGCac-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 118626 0.66 0.765069
Target:  5'- gACGU-CAACCgGCuCGUGGccgACCCCu- -3'
miRNA:   3'- -UGCAuGUUGGgCGcGCACC---UGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 117789 0.68 0.656784
Target:  5'- gGCGggGCGccacGCCCG-GCGgggcgGGGCCCCAc -3'
miRNA:   3'- -UGCa-UGU----UGGGCgCGCa----CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 117224 0.69 0.595978
Target:  5'- gGCGUcgACGACgCGCGCGUccacgucggcGGGCCCgAGg -3'
miRNA:   3'- -UGCA--UGUUGgGCGCGCA----------CCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 115595 0.72 0.406678
Target:  5'- uCGaGCAGCUCGCGCGUGG-CCCa-- -3'
miRNA:   3'- uGCaUGUUGGGCGCGCACCuGGGguu -5'
29378 3' -58.8 NC_006151.1 + 115117 0.67 0.697035
Target:  5'- gGCGccgccgGCGACgCGCGCGUGcGCCUCGg -3'
miRNA:   3'- -UGCa-----UGUUGgGCGCGCACcUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 114421 0.71 0.459883
Target:  5'- cACGUGCAcCaCCGCGUGcUGGACCgCCu- -3'
miRNA:   3'- -UGCAUGUuG-GGCGCGC-ACCUGG-GGuu -5'
29378 3' -58.8 NC_006151.1 + 114334 0.68 0.626362
Target:  5'- cUGcGCGACgUGCGCGUgcucuucuucgaGGACCCCGAc -3'
miRNA:   3'- uGCaUGUUGgGCGCGCA------------CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 114223 0.66 0.755626
Target:  5'- cGCGUguuccuggccucGguGgCCGCGCG-GGACCCCu- -3'
miRNA:   3'- -UGCA------------UguUgGGCGCGCaCCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 113292 0.71 0.469108
Target:  5'- gGCGUACGcgcgcuaCCGCGCgGUGGACgCCAc -3'
miRNA:   3'- -UGCAUGUug-----GGCGCG-CACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 107250 0.68 0.636509
Target:  5'- cAUGgGCGACgCC-CGCGUGGACCCg-- -3'
miRNA:   3'- -UGCaUGUUG-GGcGCGCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 106891 0.71 0.469108
Target:  5'- cUGUGCGACCUGCGCG---ACCCCGc -3'
miRNA:   3'- uGCAUGUUGGGCGCGCaccUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 106621 0.67 0.736429
Target:  5'- cGCGUACGACgCCGCggucaccgaGCGccUGGACgCCGc -3'
miRNA:   3'- -UGCAUGUUG-GGCG---------CGC--ACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 106265 0.68 0.676982
Target:  5'- cUGUuCAACUuuaCGCGCGUGGACCUg-- -3'
miRNA:   3'- uGCAuGUUGG---GCGCGCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 105599 0.67 0.726692
Target:  5'- cGCGgaGCGGCugCCGCG-GUGGAUCCCGc -3'
miRNA:   3'- -UGCa-UGUUG--GGCGCgCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 103525 0.67 0.716874
Target:  5'- gACGUcCGACCCcgGCGCGcuggUGGGCgCCGGg -3'
miRNA:   3'- -UGCAuGUUGGG--CGCGC----ACCUGgGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.