Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29378 | 3' | -58.8 | NC_006151.1 | + | 103298 | 0.67 | 0.687031 |
Target: 5'- cGCGcGCGGCUCGCGCGgcgcGACgCCGAg -3' miRNA: 3'- -UGCaUGUUGGGCGCGCac--CUGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 102528 | 0.68 | 0.64361 |
Target: 5'- gGCGUcuACGACCagacggugguggcgCGCGCGcGGGCCCUg- -3' miRNA: 3'- -UGCA--UGUUGG--------------GCGCGCaCCUGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 102491 | 0.72 | 0.415277 |
Target: 5'- gGCGUGCuucaugGACgCCGCgGCGcgGGACCCCGg -3' miRNA: 3'- -UGCAUG------UUG-GGCG-CGCa-CCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 100935 | 0.67 | 0.706986 |
Target: 5'- gGCGUGCcccuGCUCGCGCaaacgugGGugCCCGu -3' miRNA: 3'- -UGCAUGu---UGGGCGCGca-----CCugGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 100854 | 0.68 | 0.666897 |
Target: 5'- aGCGU-CAACgUGCGCGacUGGGCCgCCGu -3' miRNA: 3'- -UGCAuGUUGgGCGCGC--ACCUGG-GGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 99619 | 0.69 | 0.565827 |
Target: 5'- gGCGcACAGCgCCGCGCGcGaGGCCCuCAAc -3' miRNA: 3'- -UGCaUGUUG-GGCGCGCaC-CUGGG-GUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 98219 | 0.75 | 0.285202 |
Target: 5'- uGCGcgGCGgcGCCCGCGCGcGGACCCUc- -3' miRNA: 3'- -UGCa-UGU--UGGGCGCGCaCCUGGGGuu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 97736 | 0.67 | 0.706986 |
Target: 5'- gACGUGCAGCgCGCGgugcgggaacaCGUGG-CUCCGGa -3' miRNA: 3'- -UGCAUGUUGgGCGC-----------GCACCuGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 86496 | 0.66 | 0.765069 |
Target: 5'- uGCGUGauCGGgCgGCGCGUGGGCaCCAu -3' miRNA: 3'- -UGCAU--GUUgGgCGCGCACCUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 86326 | 0.8 | 0.14367 |
Target: 5'- cCGUGCucGCCCGCGcCGUGGGCCCgGAc -3' miRNA: 3'- uGCAUGu-UGGGCGC-GCACCUGGGgUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 85345 | 0.78 | 0.194707 |
Target: 5'- aGCGUGCucgccgcgcuggcgcGCCUGCGCGUGGuCCCCGg -3' miRNA: 3'- -UGCAUGu--------------UGGGCGCGCACCuGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 83001 | 0.69 | 0.585892 |
Target: 5'- cACGgccGCGGCgcagaCGCGCGgcgaGGGCCCCAGg -3' miRNA: 3'- -UGCa--UGUUGg----GCGCGCa---CCUGGGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 82600 | 0.69 | 0.61622 |
Target: 5'- gACGaACAggguggGCCCGCGCGcGGGCgCCGc -3' miRNA: 3'- -UGCaUGU------UGGGCGCGCaCCUGgGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 82126 | 0.72 | 0.432805 |
Target: 5'- cACGUggaaGCGGCCCGCGgGcGGGCCCg-- -3' miRNA: 3'- -UGCA----UGUUGGGCGCgCaCCUGGGguu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 80690 | 0.66 | 0.783597 |
Target: 5'- -gGUucGCGGCCCG-GCGcGGGCCUCAc -3' miRNA: 3'- ugCA--UGUUGGGCgCGCaCCUGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 77964 | 0.66 | 0.746077 |
Target: 5'- aGCGUGC-GCCCGCGCc-GGuACgCCGAg -3' miRNA: 3'- -UGCAUGuUGGGCGCGcaCC-UGgGGUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 77506 | 0.7 | 0.542979 |
Target: 5'- uACGUGCGcacggagcuggcgcGCcucggCCGCGCGUGGgccGCCCCGc -3' miRNA: 3'- -UGCAUGU--------------UG-----GGCGCGCACC---UGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 75406 | 0.67 | 0.716874 |
Target: 5'- uGCGUGCGcggguccgggagGCCCG-GCGUGGGCgCgAAg -3' miRNA: 3'- -UGCAUGU------------UGGGCgCGCACCUGgGgUU- -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 72021 | 0.72 | 0.415277 |
Target: 5'- cACGUcgGCGcCCCGCGCG-GGcGCCCCGc -3' miRNA: 3'- -UGCA--UGUuGGGCGCGCaCC-UGGGGUu -5' |
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29378 | 3' | -58.8 | NC_006151.1 | + | 69630 | 0.71 | 0.478426 |
Target: 5'- cGCGgucgGCGuCCCGCGCGUGcGGCgCCGc -3' miRNA: 3'- -UGCa---UGUuGGGCGCGCAC-CUGgGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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