miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 117789 0.68 0.656784
Target:  5'- gGCGggGCGccacGCCCG-GCGgggcgGGGCCCCAc -3'
miRNA:   3'- -UGCa-UGU----UGGGCgCGCa----CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 118626 0.66 0.765069
Target:  5'- gACGU-CAACCgGCuCGUGGccgACCCCu- -3'
miRNA:   3'- -UGCAuGUUGGgCGcGCACC---UGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 119107 0.67 0.687031
Target:  5'- cGCGUACGugAgCCGCGCGgccGGCCUCGu -3'
miRNA:   3'- -UGCAUGU--UgGGCGCGCac-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 119314 0.67 0.706986
Target:  5'- cACGgccucGCAGCCCGCGac--GGCCCCGGg -3'
miRNA:   3'- -UGCa----UGUUGGGCGCgcacCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 119734 0.67 0.706986
Target:  5'- cACGUACcGCgCCGC-CGUGGACCg--- -3'
miRNA:   3'- -UGCAUGuUG-GGCGcGCACCUGGgguu -5'
29378 3' -58.8 NC_006151.1 + 121045 0.79 0.171495
Target:  5'- uUGUGCuggccuGCCCGCGCGUGGGCUUCAc -3'
miRNA:   3'- uGCAUGu-----UGGGCGCGCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 121770 0.68 0.646652
Target:  5'- aGCGcUGCGAcCCCGCG-GUGGugcgcgagcugGCCCCAc -3'
miRNA:   3'- -UGC-AUGUU-GGGCGCgCACC-----------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 122032 0.67 0.740299
Target:  5'- cACGUACGGCggGCGCGUGGAgacggagcugcaguuCCuCCAc -3'
miRNA:   3'- -UGCAUGUUGggCGCGCACCU---------------GG-GGUu -5'
29378 3' -58.8 NC_006151.1 + 122311 0.81 0.12003
Target:  5'- cACGcgGCAGCUggcggUGCGCGUGGACCCCGAg -3'
miRNA:   3'- -UGCa-UGUUGG-----GCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 123738 0.67 0.684021
Target:  5'- gGCGU-CAuGCCCGCuguggcggucuuugGCGcGGGCCCCGGg -3'
miRNA:   3'- -UGCAuGU-UGGGCG--------------CGCaCCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 124672 0.71 0.49733
Target:  5'- --cUACGGCCUGCGCGaggGGGCCCaCGGg -3'
miRNA:   3'- ugcAUGUUGGGCGCGCa--CCUGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 125183 0.69 0.57584
Target:  5'- aGCGccuCGGCCUcgccgGCGuCGUGGGCCCCGc -3'
miRNA:   3'- -UGCau-GUUGGG-----CGC-GCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 128190 0.68 0.626362
Target:  5'- gGCGaGCGugCCGCGCuccaUGGcGCCCCAn -3'
miRNA:   3'- -UGCaUGUugGGCGCGc---ACC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 128220 0.71 0.478426
Target:  5'- gGCGUGCGACgaGCuCGUGGGCgCCAGg -3'
miRNA:   3'- -UGCAUGUUGggCGcGCACCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 128606 0.74 0.342067
Target:  5'- cGCGcGCcACCCGCgGCGUGcGCCCCAGg -3'
miRNA:   3'- -UGCaUGuUGGGCG-CGCACcUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 129041 0.68 0.676982
Target:  5'- cGCGUACAcCUCGCG-GUGcGGCUCCGc -3'
miRNA:   3'- -UGCAUGUuGGGCGCgCAC-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 129781 0.71 0.478426
Target:  5'- gGCGUcGCu-CCCGCcgGCGUGGGCCCgCAu -3'
miRNA:   3'- -UGCA-UGuuGGGCG--CGCACCUGGG-GUu -5'
29378 3' -58.8 NC_006151.1 + 130257 0.66 0.746077
Target:  5'- cGCGgaagaGGCCgGCGCGcGG-CCCCGAg -3'
miRNA:   3'- -UGCaug--UUGGgCGCGCaCCuGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 130534 0.72 0.414412
Target:  5'- cGCGUACAcgccCCCGCGCGaGGgcggcgcgcugccGCCCCAc -3'
miRNA:   3'- -UGCAUGUu---GGGCGCGCaCC-------------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 133157 0.72 0.432805
Target:  5'- gGCG-GCGGCgCGgGCGUGGGCCUCGg -3'
miRNA:   3'- -UGCaUGUUGgGCgCGCACCUGGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.